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Updated: May 6, 2026

Using Human Differentially Expressed Gene Lists to Perform Downstream Pathway Enrichment Analysis and Target Prioritization
Published on: October 3, 2025
Complementarity between distance- and probability-based methods of gene neighbourhood identification for pathway
Junha Shin1, Tak Lee, Hanhae Kim
1Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea. insuklee@yonsei.ac.kr.
Abstract:
Identifying gene neighbourhoods using either distance- or probability-based measures has proven effective in retrieving co-functional links. We report that these two approaches are highly complementary, with differential sensitivity for the core pathway links. We demonstrate that integrating these measures improves prediction of both pathways and phenotypes.
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