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Analyzing DNA-Protein Interactions with Streptavidin-Based Biolayer Interferometry
Published on: January 17, 2025
Viral interference with DNA repair by targeting of the single-stranded DNA binding protein RPA
Pubali Banerjee1, Rowena DeJesus, Ole Gjoerup
1Department of Developmental, Molecular and Chemical Biology, Tufts University School of Medicine, Boston, Massachusetts, United States of America ; Program in Molecular Microbiology, Sackler School of Graduate Biomedical Sciences, Tufts University School of Medicine, Boston, Massachusetts, United States of America.
Abstract:
Correct repair of damaged DNA is critical for genomic integrity. Deficiencies in DNA repair are linked with human cancer. Here we report a novel mechanism by which a virus manipulates DNA damage responses. Infection with murine polyomavirus sensitizes cells to DNA damage by UV and etoposide. Polyomavirus large T antigen (LT) alone is sufficient to sensitize cells 100 fold to UV and other kinds of DNA damage. This results in activated stress responses and apoptosis. Genetic analysis shows that LT sensitizes via the binding of its origin-binding domain (OBD) to the single-stranded DNA binding protein replication protein A (RPA). Overexpression of RPA protects cells expressing OBD from damage, and knockdown of RPA mimics the LT phenotype. LT prevents recruitment of RPA to nuclear foci after DNA damage. This leads to failure to recruit repair proteins such as Rad51 or Rad9, explaining why LT prevents repair of double strand DNA breaks by homologous recombination. A targeted intervention directed at RPA based on this viral mechanism could be useful in circumventing the resistance of cancer cells to therapy.
Insights
Murine polyomavirus large T antigen (LT) disrupts DNA repair by binding replication protein A (RPA), sensitizing cells to DNA damage. This viral mechanism offers potential strategies against cancer therapy resistance.
Area of Science:
- Molecular Biology
- Virology
- Genomics
Background:
- Genomic integrity relies on accurate DNA repair.
- Defects in DNA repair pathways are implicated in cancer development.
- Viruses can manipulate host cell processes, including DNA damage responses.
Purpose of the Study:
- To elucidate the mechanism by which murine polyomavirus sensitizes cells to DNA damage.
- To identify the viral protein and host factor involved in this process.
- To explore potential therapeutic implications of this viral strategy.
Main Methods:
- Infection of cells with murine polyomavirus.
- Expression of polyomavirus large T antigen (LT) and its origin-binding domain (OBD).
- Genetic analysis involving overexpression and knockdown of replication protein A (RPA).
- Assessment of DNA damage responses, nuclear foci formation, and recruitment of repair proteins (Rad51, Rad9).
Main Results:
- Murine polyomavirus infection and LT expression significantly sensitize cells (100-fold) to UV and etoposide-induced DNA damage.
- LT's origin-binding domain (OBD) binds to replication protein A (RPA), mediating sensitization.
- Overexpression of RPA confers protection, while RPA knockdown mimics the LT sensitization phenotype.
- LT inhibits RPA recruitment to nuclear foci after DNA damage, preventing the assembly of DNA repair complexes like Rad51 and Rad9.
- This leads to impaired homologous recombination repair of double-strand DNA breaks.
Conclusions:
- Murine polyomavirus LT employs a novel mechanism to disrupt DNA repair by interfering with RPA function.
- This viral interference with DNA damage response pathways highlights a vulnerability that could be exploited.
- Targeting the RPA-LT interaction may offer a strategy to overcome therapeutic resistance in cancer cells.
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