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Updated: May 6, 2026

Antibiotic Dereplication Using the Antibiotic Resistance Platform
Published on: October 17, 2019
The fosfomycin resistance gene fosB3 is located on a transferable, extrachromosomal circular intermediate in clinical
Xiaogang Xu1, Chunhui Chen, Dongfang Lin
1Institute of Antibiotics, Huashan Hospital, Fudan University, Shanghai, China ; Key Laboratory of Clinical Pharmacology of Antibiotics, Ministry of Health, China.
Abstract:
Some VanM-type vancomycin-resistant Enterococcus faecium isolates from China are also resistant to fosfomycin. To investigate the mechanism of fosfomycin resistance in these clinical isolates, antimicrobial susceptibility testing, filter-mating, Illumina/Solexa sequencing, inverse PCR and fosfomycin resistance gene cloning were performed. Three E. faecium clinical isolates were highly resistant to fosfomycin and vancomycin with minimal inhibitory concentrations (MICs) >1024 µg/ml and >256 µg/ml, respectively. The fosfomycin and vancomycin resistance of these strains could be co-transferred by conjugation. They carried a fosfomycin resistance gene fosB encoding a protein differing by one or two amino acids from FosB, which is encoded on staphylococcal plasmids. Accordingly, the gene was designated fosB3. The fosB3 gene was cloned into pMD19-T, and transformed into E. coli DH5α. The fosfomycin MIC for transformants with fosB3 was 750-fold higher than transformants without fosB3. The fosB3 gene could be transferred by an extrachromosomal circular intermediate. The results indicate that the fosB3 gene is transferable, can mediate high level fosfomycin resistance in both Gram-positive and Gram-negative bacteria, and can be located on a circular intermediate.
Insights
Vancomycin-resistant Enterococcus faecium isolates exhibit fosfomycin resistance due to a transferable fosB3 gene. This gene confers high-level fosfomycin resistance in both Gram-positive and Gram-negative bacteria.
Area of Science:
- Microbiology
- Genetics
- Antimicrobial Resistance
Background:
- Vancomycin-resistant Enterococcus faecium (VREfm) is a significant healthcare-associated pathogen.
- Some VREfm isolates co-harbor resistance to other antibiotics, including fosfomycin.
- The emergence of fosfomycin resistance in VREfm necessitates understanding its underlying mechanisms.
Purpose of the Study:
- To investigate the genetic basis of fosfomycin resistance in clinical VREfm isolates from China.
- To characterize the mechanism and transferability of the identified fosfomycin resistance determinant.
Main Methods:
- Antimicrobial susceptibility testing (MIC determination).
- Bacterial conjugation (filter-mating) for gene transfer studies.
- Next-generation sequencing (Illumina/Solexa) and inverse PCR for gene identification.
- Gene cloning and transformation into E. coli for functional analysis.
Main Results:
- Three VREfm clinical isolates displayed high-level resistance to both vancomycin (>256 µg/ml) and fosfomycin (>1024 µg/ml).
- Resistance determinants were co-transferred via conjugation, indicating a common genetic element.
- A novel fosfomycin resistance gene, designated fosB3, was identified, differing slightly from known staphylococcal fosB genes.
- Cloning and expression of fosB3 in E. coli resulted in a 750-fold increase in fosfomycin MIC.
- The fosB3 gene was found to be located on a transferable extrachromosomal circular intermediate.
Conclusions:
- The fosB3 gene is responsible for high-level fosfomycin resistance in the studied VREfm isolates.
- fosB3 is a transferable gene that can confer fosfomycin resistance in both Gram-positive and Gram-negative bacteria.
- The presence of fosB3 on a mobile genetic element poses a significant threat for the dissemination of fosfomycin resistance.
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