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Updated: May 6, 2026

Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
OCT1 genetic variants are associated with long term outcomes in imatinib treated chronic myeloid leukemia patients
Maya Koren-Michowitz1, Zehavit Buzaglo, Elena Ribakovsky
1Division of Hematology, Chaim Sheba Medical Center, Tel Hashomer, Israel; Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Objectives:
One third of CML patients treated with first line imatinib have suboptimal responses or treatment failures with increased risk for disease progression. Imatinib is actively transported into cells by the SLC22A1 transporter (hOCT1) and its genetic variants may affect intracellular drug import. We studied the effect of SLC22A1 genetic variants on long-term outcomes of imatinib treated patients.
Methods:
A total of 167 patients, 94% in chronic phase, were analyzed for rs41267797, rs683369, rs12208357, and rs628031 variants using the Sequenom MassARRAY platform.
Results:
Rates of CHR, MCyR, CCyR, and MMolR were not significantly different according to allelic variants. However, patients with AA or GA rs628031 genotypes had a higher incidence of poor response to imatinib compared to the GG genotype (47% compared to 29%, P = 0.06), and a higher rate of KD mutation discovery (8/16 vs. 5/27, P = 0.04), suggesting that secondary resistance was more common in these genotypes. Median EFS was shorter for rs628031 genotype AA/AG compared with the GG genotype (61 months and not reached, respectively, P = 0.05), and 5 yr OS rates were lower for patients with the rs628031 genotypes AA/AG compared with the GG genotype (88% and 97%, respectively, P = 0.03). Patients with AA/GA rs628031 and additional rare genotypes had worse EFS and OS compared to patients with only AA/GA rs628031 (P = 0.02 for EFS and 0.01 for OS). There was no difference in pretreatment SLC22A1 mRNA expression levels in patients with rs628031 genotypes GG/AA or GA.
Conclusions:
Studying SLC22A1 genetic variants prior to TKI initiation could influence treatment decisions.
Insights
Genetic variants in the SLC22A1 transporter (hOCT1) impact imatinib treatment outcomes in chronic myeloid leukemia (CML) patients. Specific rs628031 genotypes are linked to poorer response and survival, suggesting potential for personalized therapy.
Area of Science:
- Pharmacogenomics
- Hematologic Malignancies
- Molecular Biology
Background:
- First-line imatinib therapy in chronic myeloid leukemia (CML) can lead to suboptimal responses or treatment failure in one-third of patients.
- Imatinib cellular uptake is mediated by the SLC22A1 transporter (hOCT1), and its genetic variations may influence drug efficacy.
- Investigating the role of SLC22A1 genetic variants in imatinib response is crucial for understanding treatment variability.
Purpose of the Study:
- To investigate the association between SLC22A1 genetic variants and long-term outcomes in CML patients treated with imatinib.
- To determine if specific SLC22A1 genotypes correlate with treatment response, resistance, and survival.
- To explore the potential of pre-treatment genetic profiling for optimizing CML therapy.
Main Methods:
- Genotyping of 167 CML patients (94% in chronic phase) for key SLC22A1 variants (rs41267797, rs683369, rs12208357, rs628031) using Sequenom MassARRAY.
- Analysis of clinical endpoints including complete hematologic response (CHR), major cytogenetic response (MCyR), complete cytogenetic response (CCyR), and major molecular response (MMolR).
- Evaluation of event-free survival (EFS) and overall survival (OS) in relation to identified genotypes.
Main Results:
- No significant differences in initial response rates (CHR, MCyR, CCyR, MMolR) were observed based on allelic variants.
- Patients with AA or GA rs628031 genotypes showed a higher incidence of poor response (47% vs. 29%) and increased detection of BCR-ABL kinase domain (KD) mutations.
- rs628031 genotypes AA/AG were associated with shorter median EFS (61 months vs. not reached) and lower 5-year OS rates (88% vs. 97%) compared to the GG genotype.
Conclusions:
- SLC22A1 genetic variants, particularly rs628031, significantly influence long-term outcomes in imatinib-treated CML patients.
- The presence of specific rs628031 genotypes is linked to increased risk of secondary resistance and poorer survival.
- Pre-treatment assessment of SLC22A1 genetic variants could inform treatment decisions and personalize TKI therapy for CML.
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