Related Experiment Video
Updated: May 6, 2026

Plasmid-derived DNA Strand Displacement Gates for Implementing Chemical Reaction Networks
Published on: November 25, 2015
Irreversible bimolecular chemical reactions on directed scale-free networks
1Department of Physics and Research Institute of Basic Sciences, Kyung Hee University, Seoul 130-701, Korea.
Abstract:
Kinetics of irreversible bimolecular chemical reactions A+A→0 and A+B→0 on directed scale-free networks with the in-degree distribution P(in)(k)∼k(-γ)(in) and the out-degree distribution P(out)(ℓ)∼ℓ(-γ)(out) are investigated. Since the correlation between k and ℓ of each node generally exists in directed networks, we control the correlation (kℓ) with the probability r∈[0,1] by two different algorithms for the construction of the directed networks, i.e., the so-called k and ℓ algorithms. For r=1, the k algorithm gives (kℓ)=(k(2)), whereas the ℓ algorithm gives (kℓ)=(ℓ(2). For r=0, (kℓ)=(k)(ℓ) for both algorithms. The kinetics of both reactions are analyzed using heterogeneous mean-field (HMF) theory and Monte Carlo simulations. The density of particles (ρ) algebraically decays in time t as ρ(t)∼t(-α). The kinetics of both reactions are determined by the same rate equation, dρ/dt=aρ(2)+bρ(θ-1), apart from coefficients. The exponent θ is determined by the algorithm: θ=γ(in) for the k algorithm (r≥0) and θ=γ(min) for the ℓ algorithm (r>0), where γ(min) is the smaller exponent between γ(in) and γ(out). For θ>3, one observes the ordinary mean-field kinetics, ρ∼1/t (α=1). In contrast, for θ<3, ρ(t) anomalously decays with α=1/(θ-2). The HMF predictions are confirmed by the simulations on quenched directed networks.
Related Concept Videos
Types of Chemical Reactions: Exchange and Reversible
A special kind of exchange reaction is the oxidation-reduction reaction, or the redox reaction. These reactions involve the transfer of electrons from one compound to another. The electrons in these reactions commonly come from hydrogen atoms, which consist of an electron and a proton. A molecule gives up a...
Chemical Reactions
The relative amounts of reactants and products represented in a balanced chemical equation are often referred to as stoichiometric amounts.
Chemical Reactions
Chemical Reactions Rearrange Atoms into New Substances
A chemical reaction takes starting materials—the reactants—and changes them...
Reversible and Irreversible Processes
Reversible or Opposing Reactions
Chain Reactions

