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BioNames: linking taxonomy, texts, and trees.

Roderic D M Page1

  • 1Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, Graham Kerr Building, University of Glasgow , Glasgow , UK.

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|November 19, 2013
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Summary
This summary is machine-generated.

BioNames is a new web database offering a taxonomic dashboard for animal species. It integrates taxonomic and phylogenetic data, providing quick answers to "what is this taxon?" questions.

Keywords:
Data integrationDatabaseNomenclaturePhylogenyTaxonomy

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Area of Science:

  • Biodiversity informatics
  • Zoological nomenclature
  • Phylogenetics

Background:

  • Taxonomic and phylogenetic information is often fragmented across diverse digital resources.
  • A unified platform is needed to consolidate biodiversity data for efficient access.
  • Understanding the relationships and classification of animal taxa is fundamental to biological research.

Purpose of the Study:

  • To introduce BioNames, a comprehensive web database for animal taxonomic names.
  • To provide a centralized "dashboard" for taxonomic and phylogenetic information.
  • To facilitate quick answers to fundamental questions about animal taxa.

Main Methods:

  • Integration of data from Global Biodiversity Information Facility (GBIF) and GenBank for classifications.
  • Inclusion of images from Encyclopedia of Life (EOL) and animal names from Index of Organism Names (ION).
  • Aggregation of bibliographic data from sources like Biodiversity Heritage Library (BHL) and CrossRef.
  • Development of a user interface featuring full-text articles, interactive timelines, and zoomable phylogenies.

Main Results:

  • BioNames successfully integrates diverse biodiversity datasets into a cohesive platform.
  • The database provides a consolidated view of taxonomic and phylogenetic information for animal taxa.
  • The user interface enables intuitive exploration of taxonomic history and evolutionary relationships.

Conclusions:

  • BioNames serves as a valuable resource for researchers needing to quickly ascertain the taxonomic and phylogenetic status of animal species.
  • The platform enhances accessibility to integrated biodiversity data, streamlining research workflows.
  • It represents a significant step towards a more unified and user-friendly approach to biodiversity informatics.