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Updated: May 5, 2026

Multiplex PCR Assay for Typing of Staphylococcal Cassette Chromosome Mec Types I to V in Methicillin-resistant Staphylococcus aureus
Published on: September 5, 2013
Clonal complex 398 methicillin susceptible Staphylococcus aureus: a frequent unspecialized human pathogen with
Tomasz Chroboczek1, Sandrine Boisset, Jean-Philippe Rasigade
1French National Reference Centre for Staphylococci, Hospices Civils de Lyon, Lyon, France ; Réanimation médicale - Pavillon N, Hopital Edouard Herriot, Hospices civils de Lyon, Lyon, France.
Abstract:
Clonal complex 398 livestok-associated-MRSA (CC398 LA-MRSA) clone is described as a major animal pathogen that can also colonize and infect humans. CC398 methicillin susceptible Staphylococcus aureus (CC398 MSSA) is less described. We identified 126 CC398 MSSA strains of human origin within 6380 S. aureus isolates gathered between 2009 and 2011, from the French National Reference Centre for Staphylococci. They were characterized using antimicrobial susceptibility testing, spa typing, DNA microarrays (Identibac S. aureus Genotyping ®, Alere), CC398-specific sequence PCR, ermT (encoding macrolides résistance) PCR. Fifty-three CC398 LA-MRSA collected from French pigs and veal were used as comparators, and phylogenetic relations between human CC398 MSSA and animal CC398 MRSA populations were explored on the basis of spa-typing and DNA microarrays. CC398 MSSA were able to induce a large spectrum of infections (especially skin, bloodstream, and pneumonias). The prevalence rate of this clone was high in MSSA population, i.e., 24.7% in a local prospective study on nasal colonization, and 7.5% in a national prospective study on infective endocarditis. CC398 MSSA isolates were frequently (89%) erythromycin resistant, due to the presence of the ermT gene, a gene not detected in erythromycin resistant CC398 LA-MRSA strains. Expression of staphylococcal complement inhibitor (scn) and the chemotaxis inhibitory protein (chp), was also specific to this population. The CC398 MRSA signature included also a panel of antibiotic resistance genes, especially a type IV or V cassette mec and tetM. CC398 MSSA and CC398 LA-MRSA populations were closely related based on spa-typing and DNA microarrays, with the MRSA strains forming the most derived lineage in phylogenic trees. Both MSSA and MRSA populations may come from common ancestors, which would have evolved in the settings of different selective pressures, explaining the acquisition of ermT, chp and scn for MSSA, and antibiotic resistance genes for MRSA.
Insights
Clonal complex 398 methicillin-susceptible Staphylococcus aureus (CC398 MSSA) is a significant human pathogen, distinct from its livestock-associated methicillin-resistant counterpart. This study reveals CC398 MSSA causes various infections and possesses unique resistance genes.
Area of Science:
- Microbiology
- Infectious Diseases
- Genomics
Background:
- Livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA) clone 398 (CC398 LA-MRSA) is a known animal and human pathogen.
- The prevalence and characteristics of CC398 methicillin-susceptible Staphylococcus aureus (CC398 MSSA) in humans are less understood.
- Understanding CC398 MSSA is crucial for public health, given its potential to cause infections.
Purpose of the Study:
- To identify and characterize human CC398 MSSA isolates.
- To compare CC398 MSSA with CC398 LA-MRSA from animal sources.
- To explore the phylogenetic relationships between CC398 MSSA and CC398 LA-MRSA populations.
Main Methods:
- Analysis of 126 human CC398 MSSA strains from French national reference data (2009-2011).
- Antimicrobial susceptibility testing, spa typing, and DNA microarrays for genotyping.
- CC398-specific PCR and ermT PCR for resistance gene detection; comparison with 53 animal CC398 LA-MRSA strains.
Main Results:
- CC398 MSSA caused diverse human infections, including skin, bloodstream, and pneumonia.
- High prevalence of CC398 MSSA noted in nasal colonization (24.7%) and infective endocarditis (7.5%).
- Eighty-nine percent of CC398 MSSA were erythromycin-resistant due to ermT; specific virulence genes (scn, chp) were detected. CC398 LA-MRSA carried antibiotic resistance genes and mec elements.
Conclusions:
- Human CC398 MSSA is a significant pathogen with distinct genetic characteristics from CC398 LA-MRSA.
- Phylogenetic analysis indicates close relationships between CC398 MSSA and CC398 LA-MRSA, suggesting common ancestry.
- Divergent evolution under different selective pressures likely explains the acquisition of specific resistance and virulence genes in each population.
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