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Updated: May 5, 2026

Malachite Green Assay for the Discovery of Heat-Shock Protein 90 Inhibitors
Published on: January 20, 2023
Functional analysis of Hsp70 inhibitors
Rainer Schlecht1, Sebastian R Scholz, Heike Dahmen
1Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH), DKFZ-ZMBH-Alliance, Heidelberg, Germany.
Simultaneous knockdown of heat-inducible Hsp70 (HSPA1) and Hsc70 (HSPA8) is required to reduce cancer cell viability. Neither VER-155008 nor PES Hsp70 inhibitors showed isoform specificity in vitro.
Area of Science:
- Molecular biology
- Cellular biology
- Biochemistry
Background:
- Heat shock proteins (Hsp70) are crucial molecular chaperones and recognized anti-cancer targets.
- Multiple Hsp70 paralogs reside in different cellular compartments, necessitating isoform-specific investigation for therapeutic targeting.
- Small molecule inhibitors VER-155008 and 2-phenylethynesulfonamide (PES) were developed to target Hsp70s.
Purpose of the Study:
- To identify which Hsp70 isoform(s) must be downregulated to decrease cancer cell viability.
- To elucidate the molecular mechanism of action of Hsp70 inhibitors VER-155008 and PES in vitro.
- To determine the isoform specificity of these small molecule inhibitors.
Main Methods:
- Cancer cell viability assays.
- Simultaneous knockdown of Hsp70 isoforms (HSPA1 and HSPA8) using RNA interference.
- In vitro biochemical assays to analyze inhibitor binding and mechanism of action.
- Analysis of inhibitor interaction with Hsp70 nucleotide-binding domain (NBD) and substrate-binding domain (SBD).
Main Results:
- Significant reduction in cancer cell viability necessitates the simultaneous knockdown of heat-inducible Hsp70 (HSPA1) and constitutive Hsc70 (HSPA8).
- VER-155008 acts as an ATP-competitive inhibitor by arresting the Hsp70 nucleotide-binding domain (NBD) in a half-open conformation, disrupting allosteric regulation.
- Under tested conditions, PES exhibited non-specific, detergent-like interactions with the Hsp70 substrate-binding domain (SBD).
- Neither VER-155008 nor PES demonstrated isoform specificity.
Conclusions:
- Targeting both HSPA1 and HSPA8 concurrently is essential for reducing cancer cell proliferation.
- VER-155008's ATP-competitive inhibition mechanism offers a potential therapeutic strategy, though lacking isoform specificity.
- The non-specific action of PES limits its utility as a targeted anti-cancer therapeutic.
- Further research is needed to develop isoform-specific Hsp70 inhibitors for effective cancer therapy.
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