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Updated: May 5, 2026

Fluorescence Labeling to Visualize Low-Expressed Proteins in Zebrafish
Published on: January 24, 2025
Toll-like receptor 9 and 21 have different ligand recognition profiles and cooperatively mediate activity of
Da-Wei Yeh1, Yi-Ling Liu, Yin-Chiu Lo
1Immunology Research Center, National Health Research Institutes, Miaoli 35053, Taiwan.
Abstract:
CpG-oligodeoxynucleotides (CpG-ODNs) are potent immune stimuli currently under investigation as antimicrobial agents for different species. Toll-like receptor (TLR) 9 and TLR21 are the cellular receptors of CpG-ODN in mammals and chickens, respectively. The avian genomes lack TLR9, whereas mammalian genomes lack TLR21. Although fish contain both of these genes, the biological functions of fish TLR9 and TLR21 have not been investigated previously. In this study, we comparatively investigated zebrafish TLR9 (zebTLR9) and TLR21 (zebTLR21). The two TLRs have similar expression profiles in zebrafish. They are expressed during early development stages and are preferentially expressed in innate immune function-related organs in adult fish. Results from cell-based activation assays indicate that these two zebrafish TLRs are functional, responding to CpG-ODN but not to other TLR ligands. zebTLR9 broadly recognized CpG-ODN with different CpG motifs, but CpG-ODN with GACGTT or AACGTT had better activity to this TLR. In contrast, zebTLR21 responded preferentially to CpG-ODN with GTCGTT motifs. The distinctive ligand recognition profiles of these two TLRs were determined by their ectodomains. Activation of these two TLRs by CpG-ODN occurred inside the cells and was modulated by UNC93B1. The biological functions of these two TLRs were further investigated. The CpG-ODNs that activate both zebTLR9 and zebTLR21 were more potent than others that activate only zebTLR9 in the activation of cytokine productions and were more bactericidal in zebrafish. These results suggest that zebTLR9 and zebTLR21 cooperatively mediate the antimicrobial activities of CpG-ODN. Overall, this study provides a molecular basis for the activities of CpG-ODN in fish.
Insights
CpG-oligodeoxynucleotides (CpG-ODNs) activate zebrafish Toll-like receptors 9 and 21 (zebTLR9 and zebTLR21). These receptors cooperatively enhance immune responses and antimicrobial activity in zebrafish.
Area of Science:
- Immunology
- Molecular Biology
- Fish Biology
Background:
- CpG-oligodeoxynucleotides (CpG-ODNs) are immune stimulants.
- Toll-like receptors (TLRs) 9 and 21 recognize CpG-ODNs in mammals and chickens, respectively.
- Fish possess both TLR9 and TLR21, but their functions are uncharacterized.
Purpose of the Study:
- To comparatively investigate the functions of zebrafish TLR9 (zebTLR9) and TLR21 (zebTLR21).
- To determine the ligand recognition profiles and biological activities of zebTLR9 and zebTLR21.
- To elucidate the molecular basis for CpG-ODN activity in fish.
Main Methods:
- Comparative analysis of zebTLR9 and zebTLR21 expression profiles.
- Cell-based activation assays using various CpG-ODN motifs.
- Investigation of CpG-ODN-mediated cytokine production and bactericidal activity in zebrafish.
Main Results:
- zebTLR9 and zebTLR21 share similar expression patterns in zebrafish, with preferential expression in immune organs.
- Both receptors are functional, recognizing CpG-ODNs but not other TLR ligands.
- zebTLR9 recognizes diverse CpG motifs (GACGTT, AACGTT optimal), while zebTLR21 prefers GTCGTT motifs.
- Activation of both receptors by CpG-ODNs enhances cytokine production and bactericidal activity more than activation of only zebTLR9.
- UNC93B1 modulates CpG-ODN-induced TLR activation.
Conclusions:
- zebTLR9 and zebTLR21 cooperatively mediate the antimicrobial effects of CpG-ODNs in zebrafish.
- Distinct ectodomain structures dictate the specific ligand recognition profiles of zebTLR9 and zebTLR21.
- This study provides a molecular understanding of CpG-ODN function in fish innate immunity.
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