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Updated: May 5, 2026

Author Spotlight: Studying the Epithelial Effects of Intestinal Inflammation In Vitro on Established Murine Colonoids
Published on: June 2, 2023
NOD2 expression is regulated by microRNAs in colonic epithelial HCT116 cells
Alice Y Chuang1, Jim C Chuang, Zili Zhai
1Section of Gastroenterology, Department of Medicine, University of Chicago, Chicago, Illinois.
Background:
Crohn's disease (CD) is associated with defective sensing of pathogens in genetically susceptible individuals. Nucleotide-binding oligomerization domain containing 2 (NOD2) mutations in coding regions are strongly linked to CD pathogenesis. Our laboratory has reported that microRNAs (miRNAs) are differentially expressed in CD. However, miRNA regulation of NOD2 remains unknown. This study was designed to determine whether miRNAs regulate NOD2 expression as well as downstream nuclear factor kappaB activation and inflammatory responses in colonic epithelial HCT116 cells.
Methods:
NOD2 and miRNA expression in stimulated HCT116 cells were assessed by quantitative reverse transcription-polymerase chain reaction. Regulation of NOD2 expression by miRNAs was determined by luciferase reporter construct assays and transfection of specific miRNA mimics. Regulation of NOD2 signaling and immune response by miRNAs was assessed by transfection of mimics followed by muramyl dipeptide stimulation.
Results:
Muramyl dipeptide-induced increases in NOD2, interleukin-8, and CXCL3 expression were inversely associated with miRNA expression. Overexpression of miR-192, miR-495, miR-512, and miR-671 suppressed NOD2 expression, muramyl dipeptide-mediated NF-κB activation, and messenger RNA expressions of interleukin-8 and CXCL3 in HCT116 cells. A single-nucleotide polymorphism (rs3135500) located in the NOD2 3'-untranslated region significantly reduced miR-192 effects on NOD2 gene expression.
Conclusions:
To our knowledge, this is the first report demonstrating that miRNAs regulate NOD2 and its signaling pathway. Four miRNAs downregulate NOD2 expression, suppress NF-κB activity, and inhibit interleukin-8 and CXCL3 messenger RNA expression. Treatment of CD with miRNAs may represent a potential anti-inflammatory therapeutic strategy in CD patients with and without NOD2 gene mutations.
Insights
MicroRNAs (miRNAs) regulate Nucleotide-binding oligomerization domain containing 2 (NOD2) expression and inflammatory responses in Crohn's disease. Four specific miRNAs suppress NOD2 signaling, offering potential anti-inflammatory therapies for Crohn's disease.
Area of Science:
- Gastroenterology and Immunology
- Molecular Biology
- Inflammation Research
Background:
- Crohn's disease (CD) involves impaired pathogen sensing in susceptible individuals, with Nucleotide-binding oligomerization domain containing 2 (NOD2) mutations strongly linked to pathogenesis.
- MicroRNAs (miRNAs) are differentially expressed in CD, but their role in regulating NOD2 remains unexplored.
Purpose of the Study:
- To investigate the regulatory role of miRNAs on NOD2 expression.
- To determine the impact of miRNA regulation on NOD2-mediated nuclear factor kappaB (NF-κB) activation and inflammatory responses in colonic epithelial cells.
Main Methods:
- Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) to assess NOD2 and miRNA expression.
- Luciferase reporter assays and miRNA mimic transfections to confirm miRNA regulation of NOD2.
- Stimulation with muramyl dipeptide (MDP) followed by mimic transfection to evaluate downstream signaling and immune responses.
Main Results:
- Inverse association observed between NOD2, interleukin-8 (IL-8), and CXCL3 expression and miRNA levels upon MDP stimulation.
- Overexpression of miR-192, miR-495, miR-512, and miR-671 significantly suppressed NOD2 expression and MDP-induced NF-κB activation.
- A single-nucleotide polymorphism (rs3135500) in the NOD2 3'-untranslated region attenuated the suppressive effect of miR-192 on NOD2 expression.
Conclusions:
- This study provides the first evidence that miRNAs regulate NOD2 and its signaling pathway.
- Four specific miRNAs (miR-192, miR-495, miR-512, miR-671) were identified as negative regulators of NOD2 expression and NF-κB activity.
- miRNA-based therapeutic strategies hold potential for managing inflammation in Crohn's disease, irrespective of NOD2 mutation status.
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