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A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
Published on: September 20, 2018
From EHRs to Linked Data: representing and mining encounter data for clinical expertise evaluation
Carlo Torniai1, Shahim Essaid, Chris Barnes
1OHSU Library and Department of Medical Informatics, Oregon Health & Science University, Portland, OR.
Translational science relies on multidisciplinary teams, but data on resources and expertise is siloed. The CTSAconnect project uses a Semantic Framework to connect this data, improving team collaboration for research breakthroughs.
Area of Science:
- Biomedical research
- Translational science
- Data science
Background:
- Modern translational science emphasizes multidisciplinary teams for impactful breakthroughs.
- Existing data on investigators, resources, and clinical expertise is fragmented and siloed.
- A gap exists in representing and connecting research resources and clinical expertise data.
Purpose of the Study:
- To address data fragmentation in translational science.
- To create a Semantic Framework for connected data.
- To facilitate the production and consumption of Linked Data (LD).
Main Methods:
- Developing a Semantic Framework.
- Integrating data on biomedical research resources.
- Connecting data on clinical activities and expert knowledge.
Main Results:
- Established a framework for producing and consuming Linked Data.
- Improved representation of research resources and clinical expertise.
- Facilitated better data integration for team interaction.
Conclusions:
- The Semantic Framework addresses data silos in translational science.
- Connected data enhances collaboration among researchers and clinicians.
- This approach supports biologically meaningful and clinically consequential breakthroughs.
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