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Updated: May 5, 2026

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
Pan-histone demethylase inhibitors simultaneously targeting Jumonji C and lysine-specific demethylases display high
Dante Rotili1, Stefano Tomassi, Mariarosaria Conte
1Department of Drug Chemistry and Technologies, Sapienza University of Rome , P. le A. Moro 5, 00185 Rome, Italy.
Abstract:
In prostate cancer, two different types of histone lysine demethylases (KDM), LSD1/KDM1 and JMJD2/KDM4, are coexpressed and colocalize with the androgen receptor. We designed and synthesized hybrid LSD1/JmjC or "pan-KDM" inhibitors 1-6 by coupling the skeleton of tranylcypromine 7, a known LSD1 inhibitor, with 4-carboxy-4'-carbomethoxy-2,2'-bipyridine 8 or 5-carboxy-8-hydroxyquinoline 9, two 2-oxoglutarate competitive templates developed for JmjC inhibition. Hybrid compounds 1-6 are able to simultaneously target both KDM families and have been validated as potential antitumor agents in cells. Among them, 2 and 3 increase H3K4 and H3K9 methylation levels in cells and cause growth arrest and substantial apoptosis in LNCaP prostate and HCT116 colon cancer cells. When tested in noncancer mesenchymal progenitor (MePR) cells, 2 and 3 induced little and no apoptosis, respectively, thus showing cancer-selective inhibiting action.
Insights
New hybrid inhibitors targeting histone demethylases (KDMs) show promise against prostate and colon cancers. Compounds 2 and 3 demonstrate cancer-selective apoptosis induction, sparing healthy cells.
Area of Science:
- Medicinal Chemistry
- Cancer Biology
- Epigenetics
Background:
- Histone lysine demethylases (KDMs), specifically LSD1/KDM1 and JMJD2/KDM4, are coexpressed with androgen receptors in prostate cancer.
- Simultaneous targeting of these KDMs presents a potential therapeutic strategy.
Purpose of the Study:
- To design and synthesize novel hybrid inhibitors targeting both LSD1/KDM1 and JMJD2/KDM4 families.
- To evaluate the efficacy and cancer-selectivity of these pan-KDM inhibitors.
Main Methods:
- Hybrid inhibitors (compounds 1-6) were synthesized by coupling tranylcypromine (LSD1 inhibitor) with 2-oxoglutarate competitive templates for JmjC inhibition.
- In vitro studies assessed the impact of compounds on histone methylation levels (H3K4, H3K9) and their effects on cancer cell lines (LNCaP, HCT116) and non-cancer cells (MePR).
Main Results:
- Hybrid compounds 1-6 were synthesized and validated as potential antitumor agents.
- Compounds 2 and 3 significantly increased H3K4 and H3K9 methylation.
- Compounds 2 and 3 induced cell growth arrest and apoptosis in LNCaP and HCT116 cells, with minimal impact on MePR cells, indicating cancer-selective action.
Conclusions:
- Novel hybrid pan-KDM inhibitors (compounds 2 and 3) demonstrate potent anticancer activity.
- These compounds exhibit cancer-selective apoptosis induction, highlighting their therapeutic potential for prostate and colon cancers.
- The findings support the simultaneous targeting of LSD1/KDM1 and JMJD2/KDM4 as a viable anticancer strategy.
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