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Updated: May 4, 2026

A Computational Method to Quantify Fly Circadian Activity
Published on: October 28, 2017
Infinite-dimensional Bayesian filtering for detection of quasiperiodic phenomena in spatiotemporal data
1Department of Biomedical Engineering and Computational Science (BECS), Aalto University, P. O. Box 12200, FI-00076 AALTO, Finland.
Abstract:
This paper introduces a spatiotemporal resonator model and an inference method for detection and estimation of nearly periodic temporal phenomena in spatiotemporal data. The model is derived as a spatial extension of a stochastic harmonic resonator model, which can be formulated in terms of a stochastic differential equation. The spatial structure is included by introducing linear operators, which affect both the oscillations and damping, and by choosing the appropriate spatial covariance structure of the driving time-white noise process. With the choice of the linear operators as partial differential operators, the resonator model becomes a stochastic partial differential equation, which is compatible with infinite-dimensional Kalman filtering. The resulting infinite-dimensional Kalman filtering problem allows for a computationally efficient solution as the computational cost scales linearly with measurements in the temporal dimension. This framework is applied to weather prediction and to physiological noise elimination in functional magnetic resonance imaging brain data.
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