Self-supervised MRI tissue segmentation by discriminative clustering
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Updated: May 4, 2026

Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images
Published on: January 7, 2019
Nicolau Gonçalves1, Janne Nikkilä, Ricardo Vigário
1Department of Information and Computer Science, Aalto University School of Science, P. O. Box 15400, FI-00076 Aalto, Espoo, Finland.
Abstract:
The study of brain lesions can benefit from a clear identification of transitions between healthy and pathological tissues, through the analysis of brain imaging data. Current signal processing methods, able to address these issues, often rely on strong prior information. In this article, a new method for tissue segmentation is proposed. It is based on a discriminative strategy, in a self-supervised machine learning approach. This method avoids the use of prior information, which makes it very versatile, and able to cope with different tissue types. It also returns tissue probabilities for each voxel, crucial for a good characterization of the evolution of brain lesions. Simulated as well as real benchmark data were used to validate the accuracy of the method and compare it against other segmentation algorithms.

