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Updated: May 4, 2026

Compost Microcosms as Microbially Diverse, Natural-like Environments for Microbiome Research in Caenorhabditis elegans
Published on: September 13, 2022
Biodiversity and multifunctionality in a microbial community: a novel theoretical approach to quantify functional
Takeshi Miki1, Taichi Yokokawa, Kazuaki Matsui
1Institute of Oceanography, National Taiwan University, , Number 1, Section 4 Roosevelt Road, Taipei 10617, Taiwan, Republic of China, Center for Marine Environmental Studies (CMES), Ehime University, , 3 Bunkyo-cho, Matsuyama, Ehime 790-8577, Japan, Laboratory of Environmental Biological Science, Faculty of Science and Technology, Kinki University, , 3-4-1 Kowakae Higashiosaka, Osaka 577-8502, Japan.
Microbial communities have limited ability to maintain multiple functions when species are lost. This study introduces orthologue richness as a measure of multifunctionality, revealing that even small biodiversity loss can significantly impact ecosystem functions.
Area of Science:
- Ecology
- Microbiology
- Bioinformatics
Background:
- Ecosystems exhibit limited multifunctional redundancy, meaning they struggle to maintain multiple functions as biodiversity declines.
- Understanding microbial community multifunctionality is crucial for predicting ecosystem stability and function.
Purpose of the Study:
- To develop a novel theoretical approach for evaluating multifunctional redundancy in microbial communities.
- To define and validate orthologue richness as an index of community multifunctionality (MF).
- To quantify the relationship between species richness (SR) and MF and estimate biodiversity loss thresholds.
Main Methods:
- Utilized the Microbial Genome Database (MBGD) for comparative genomic analysis.
- Defined orthologue richness as a proxy for functional conservatism and community multifunctionality.
- Constructed MF vs. SR power functions (MF = cSR^a) and interpreted the exponent 'a' as a measure of multifunctional redundancy.
- Validated the orthologue richness index using microcosm experiments and simulated community assemblages.
Main Results:
- Confirmed that orthologue richness accurately predicts multiple ecosystem functions in microbial communities.
- Determined the exponent 'a' for microbial communities to range from 0.55 to 0.75.
- Quantified that a 6.6-8.9% loss in species richness can lead to a 5% reduction in multifunctionality.
Conclusions:
- Orthologue richness is a reliable index for assessing microbial community multifunctionality.
- Microbial communities exhibit a non-negligible initial loss effect of biodiversity on multifunctionality.
- The findings provide quantitative estimates for biodiversity thresholds crucial for maintaining ecosystem functions.
Related Concept Videos
Methods to Assess Microbial Communities
What is Biodiversity?
Microbial Interactions: Mutualism
Introduction to Microbial Ecology
Microbial Interactions: Cooperation
Applications of Molecular Taxonomy

