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Updated: May 4, 2026

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis
Published on: October 15, 2021
Short peptide sequence identity between human viruses and HLA-B27-binding human 'self' peptides
Shipeng Sun1, Tao Wang, Bo Pang
1Clinical Laboratories, Guang'anmen Hospital, China Academy of Chinese Medical Sciences, No. 5 Bei Xian Ge St., Xi Cheng District, Beijing, 100053, People's Republic of China, shipengsun@gmail.com.
Abstract:
Molecular mimicry and arthritogenic peptides form the basis of hypotheses that attempt to explain the pathogenesis of HLA-B27-positive ankylosing spondylitis (AS). We propose, therefore, that certain human viruses may possess peptide sequences that mimic HLA-B27-binding human 'self' peptides which might induce or play a significant role in AS. In the present study, we performed bioinformatic analysis, using BLASTP, of the human virus proteome and HLA-B27-binding human 'self' peptides including peptides derived from arthritogenic sequences. We identified that some HLA-B27-binding peptides, particularly those present in proteins of the cartilage and bone, are highly similar to those present in viruses known to cause chronic infection. We suggest that the identical short amino acid sequences shared between human viruses and HLA-B27 peptides may play a role in the pathogenesis of AS.
Insights
Certain viruses may trigger ankylosing spondylitis (AS) by mimicking human peptides recognized by HLA-B27. This molecular mimicry could explain the autoimmune disease
Area of Science:
- Immunology
- Virology
- Genetics
Background:
- Ankylosing spondylitis (AS) pathogenesis is hypothesized to involve molecular mimicry and arthritogenic peptides.
- The human leukocyte antigen (HLA)-B27 gene is strongly associated with AS, suggesting its critical role.
Purpose of the Study:
- To investigate if human viruses possess peptide sequences that mimic HLA-B27-binding self-peptides.
- To explore the potential role of viral mimicry in the development of HLA-B27-positive ankylosing spondylitis.
Main Methods:
- Bioinformatic analysis using BLASTP.
- Comparison of human virus proteomes with HLA-B27-binding self-peptides, including arthritogenic sequences.
Main Results:
- Identification of highly similar peptide sequences between certain chronic infection-causing viruses and HLA-B27-binding peptides.
- Specific similarity noted in peptides derived from cartilage and bone proteins.
Conclusions:
- Shared short amino acid sequences between human viruses and HLA-B27 peptides may contribute to AS pathogenesis.
- Molecular mimicry by viral peptides is a plausible mechanism in HLA-B27-associated ankylosing spondylitis.
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