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Updated: May 4, 2026

Brain Infarct Segmentation and Registration on MRI or CT for Lesion-symptom Mapping
Published on: September 25, 2019
Image coregistration: quantitative processing framework for the assessment of brain lesions.
Hannu Huhdanpaa1, Darryl H Hwang, Gregory G Gasparian
1Department of Radiology, University of Southern California, 1500 San Pablo Street, Second Floor Imaging, Los Angeles, CA, 90033, USA, hth_783@usc.edu.
This study introduces a novel, automated quantitative post-processing framework for brain lesion analysis using MRI. The framework enhances scalability and adoption for researchers and clinicians, enabling in-depth voxel-wise analysis.
Area of Science:
- Medical Imaging
- Neuroscience
- Biomedical Engineering
Background:
- Quantitative assessment of brain lesions requires coregistering MRI parameters.
- Existing frameworks lack generalization and adaptability for diverse clinical and research needs.
- There is a need for an intuitive, automated quantitative processing framework.
Purpose of the Study:
- To construct a generalized and adaptable quantitative post-processing framework for brain lesion analysis.
- To enable intuitive, near real-time, in-depth voxel-wise analysis of multiparametric MRI data.
- To validate the framework's functionality using brain tumor MRI cases.
Main Methods:
- Developed a framework using Matlab and SPM software components.
- Created Matlab routines for coregistration transform extraction, ROI specification, and voxel value storage.
- Input coregistered MRI sequences for multiparametric analysis and model derivation.
Main Results:
- Successfully implemented an intuitive quantitative post-processing framework.
- Validated framework functionality with brain tumor MRI cases.
- Demonstrated increased usage of post-processing and simultaneous research activities.
Conclusions:
- Common software components can create an intuitive, real-time quantitative post-processing framework.
- The framework improves scalability and adoption for diagnostic question answering.
- Facilitates multiparametric voxel-wise analysis for improved clinical and research insights.
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