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Updated: May 4, 2026

Measuring Single-Cell Mitochondrial DNA Copy Number and Heteroplasmy Using Digital Droplet Polymerase Chain Reaction
Published on: July 12, 2022
Yeast cells expressing the human mitochondrial DNA polymerase reveal correlations between polymerase fidelity and
Yufeng Qian1, Aashiq H Kachroo, Christopher M Yellman
1From the Institute for Cellular and Molecular Biology.
Abstract:
Mutations in the human mitochondrial polymerase (polymerase-γ (Pol-γ)) are associated with various mitochondrial disorders, including mitochondrial DNA (mtDNA) depletion syndrome, Alpers syndrome, and progressive external opthamalplegia. To correlate biochemically quantifiable defects resulting from point mutations in Pol-γ with their physiological consequences, we created "humanized" yeast, replacing the yeast mtDNA polymerase (MIP1) with human Pol-γ. Despite differences in the replication and repair mechanism, we show that the human polymerase efficiently complements the yeast mip1 knockouts, suggesting common fundamental mechanisms of replication and conserved interactions between the human polymerase and other components of the replisome. We also examined the effects of four disease-related point mutations (S305R, H932Y, Y951N, and Y955C) and an exonuclease-deficient mutant (D198A/E200A). In haploid cells, each mutant results in rapid mtDNA depletion, increased mutation frequency, and mitochondrial dysfunction. Mutation frequencies measured in vivo equal those measured with purified enzyme in vitro. In heterozygous diploid cells, wild-type Pol-γ suppresses mutation-associated growth defects, but continuous growth eventually leads to aerobic respiration defects, reduced mtDNA content, and depolarized mitochondrial membranes. The severity of the Pol-γ mutant phenotype in heterozygous diploid humanized yeast correlates with the approximate age of disease onset and the severity of symptoms observed in humans.
Insights
Human mitochondrial polymerase-gamma (Pol-γ) efficiently complements yeast, enabling study of disease mutations. Mutant Pol-γ causes mtDNA depletion and dysfunction, with severity correlating to human disease onset.
Area of Science:
- Mitochondrial biology
- Molecular genetics
- Yeast genetics
Background:
- Mutations in human mitochondrial polymerase-gamma (Pol-γ) are linked to mitochondrial disorders.
- Understanding Pol-γ's role in mtDNA replication and repair is crucial for disease research.
Purpose of the Study:
- To establish a "humanized" yeast model expressing human Pol-γ.
- To correlate biochemical defects of Pol-γ mutations with physiological consequences.
- To investigate the impact of specific Pol-γ disease-related mutations.
Main Methods:
- Replaced yeast MIP1 with human Pol-γ in a "humanized" yeast system.
- Analyzed effects of wild-type and mutant human Pol-γ in haploid and heterozygous diploid yeast.
- Quantified mtDNA depletion, mutation frequency, and mitochondrial function.
Main Results:
- Human Pol-γ successfully complemented yeast mip1 knockouts, indicating conserved replication mechanisms.
- Disease-associated Pol-γ mutants caused rapid mtDNA depletion, increased mutation rates, and mitochondrial dysfunction in haploid cells.
- In heterozygous diploids, mutant Pol-γ phenotypes correlated with human disease severity and onset age.
Conclusions:
- Humanized yeast is a viable model for studying Pol-γ function and disease.
- Pol-γ mutations directly cause mtDNA instability and mitochondrial dysfunction.
- The severity of Pol-γ mutations in this model predicts human disease phenotypes.
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