Related Experiment Video
Updated: May 4, 2026

12:36
Chromatin Immunoprecipitation Assay for the Identification of Arabidopsis Protein-DNA Interactions In Vivo
Published on: January 14, 2016
20.0K
Chromatin-bound DNA-dependent RNA polymarase in developing pea cotyledons : II. Polymerase activity and template
1John Innes Institute, Colney Lane, NR4 7UH, Norwich, U.K..
Planta
|January 11, 2014
Summary
Faster-growing pea cotyledons show higher DNA-dependent RNA polymerase activity and template availability. Environmental factors influence these rates, with extra DNA utilized more for RNA synthesis in slower-growing tissues.
Area of Science:
- Plant molecular biology
- Biochemistry
- Developmental biology
Background:
- Gene expression regulation is crucial for plant development.
- Environmental conditions significantly impact plant growth rates and metabolic processes.
- DNA-dependent RNA polymerase activity and template availability are key indicators of transcriptional regulation.
Purpose of the Study:
- To investigate the relationship between environmental factors and RNA polymerase activity in developing pea cotyledons.
- To assess how template availability for RNA synthesis changes with varying growth rates.
- To understand the differential utilization of synthesized DNA for RNA production under different environmental conditions.
Main Methods:
- Pea cotyledons were cultivated under distinct environmental conditions.
- Chromatin-bound DNA-dependent RNA polymerase activity was measured.
- Template availability for homologous RNA polymerase was quantified.
- Extra DNA synthesis (above 2C level) and its utilization for RNA synthesis were analyzed.
Main Results:
- Higher maximum polymerase activity and template availability were observed in rapidly developing cotyledons.
- Template availability remained relatively constant within an environment but varied between different environments.
- Slower-developing cotyledons showed greater utilization of extra synthesized DNA for RNA synthesis compared to faster-developing ones.
Conclusions:
- Environmental conditions directly influence the transcriptional machinery in developing pea cotyledons.
- Growth rate is a significant factor modulating DNA-dependent RNA polymerase activity and template accessibility.
- Differential DNA utilization for RNA synthesis suggests distinct regulatory strategies in plants adapting to varying developmental paces.
Related Concept Videos
RNA Polymerase II Accessory Proteins
8.9K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
8.9K
Transcription Initiation
17.0K
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...
17.0K
Eukaryotic RNA Polymerases
17.3K
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
All three eukaryotic RNAPs require specific transcription factors, of which the...
17.3K
The Replisome
31.2K
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...
31.2K
Transcription Elongation Factors
11.2K
Transcription elongation is a dynamic process that alters depending upon the sequence heterogeneity of the DNA being transcribed. Hence, it is not surprising that the elongation complex's composition also varies along the way while transcribing a gene.
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
11.2K
Chromatin Structure Regulates pre-mRNA Processing
6.6K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
6.6K

