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qKAT: Quantitative Semi-automated Typing of Killer-cell Immunoglobulin-like Receptor Genes
Published on: March 6, 2019
Variability in the CIITA gene interacts with HLA in multiple sclerosis.
A Gyllenberg1, F Piehl1, L Alfredsson2
1Department of Clinical Neuroscience, Neuroimmunology Unit, Karolinska Institutet, Stockholm, Sweden.
Variations in the CIITA gene influence multiple sclerosis (MS) risk, particularly when interacting with human leukocyte antigen (HLA) types like HLA-DRB1*15:01. This interaction highlights HLA
Area of Science:
- Immunogenetics
- Neuroimmunology
- Genetic Epidemiology
Background:
- Human leukocyte antigen (HLA) genes are key genetic factors influencing multiple sclerosis (MS) susceptibility.
- Specific HLA alleles, such as HLA-DRB1*15:01 (risk) and HLA-A*02 (protective), play significant roles in MS.
- The CIITA gene, essential for HLA class II expression, has been linked to autoimmune diseases including MS.
Purpose of the Study:
- To investigate the association between the CIITA gene and MS risk.
- To examine potential interactions between CIITA and HLA alleles in MS.
- To clarify the role of CIITA genetic variations in MS pathogenesis.
Main Methods:
- Association analyses were conducted using CIITA in a cohort of 2000 MS cases and up to 6900 controls.
- Interaction analyses were performed between CIITA single-nucleotide polymorphism (SNP) rs4774 and HLA alleles.
- The independence of these associations from the nearby CLEC16A gene was assessed.
Main Results:
- The CIITA SNP rs4774 showed a significant association with MS risk in individuals carrying the HLA-DRB1*15 allele (OR: 1.21) and the HLA-A*02 allele (OR: 1.33).
- These associations were independent of the MS susceptibility gene CLEC16A.
- A significant interaction was confirmed between rs4774 and HLA-DRB1*15:01, indicating an elevated MS risk in individuals with both risk alleles.
Conclusions:
- Genetic variations in the CIITA gene contribute to MS risk.
- The impact of CIITA on MS risk is modulated by specific MS-associated HLA haplotypes.
- These findings reinforce the critical role of HLA in the genetic architecture of MS.
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