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Mapping the human toxome by systems toxicology
Mounir Bouhifd1, Helena T Hogberg, Andre Kleensang
1Bloomberg School of Public Health, Johns Hopkins University, CAAT, Baltimore, MD, USA.
Abstract:
Toxicity testing typically involves studying adverse health outcomes in animals subjected to high doses of toxicants with subsequent extrapolation to expected human responses at lower doses. The low-throughput of current toxicity testing approaches (which are largely the same for industrial chemicals, pesticides and drugs) has led to a backlog of more than 80,000 chemicals to which human beings are potentially exposed whose potential toxicity remains largely unknown. Employing new testing strategies that employ the use of predictive, high-throughput cell-based assays (of human origin) to evaluate perturbations in key pathways, referred as pathways of toxicity, and to conduct targeted testing against those pathways, we can begin to greatly accelerate our ability to test the vast 'storehouses' of chemical compounds using a rational, risk-based approach to chemical prioritization and provide test results that are more predictive of human toxicity than current methods. The NIH Transformative Research Grant project Mapping the Human Toxome by Systems Toxicology aims at developing the tools for pathway mapping, annotation and validation as well as the respective knowledge base to share this information.
Insights
New high-throughput, cell-based toxicity testing methods can accelerate the evaluation of chemical compounds. This approach uses predictive assays to identify toxicity pathways, offering more accurate human health risk assessments.
Area of Science:
- Toxicology
- Systems Biology
- Computational Biology
Background:
- Current toxicity testing relies on animal models and high doses, leading to a large backlog of untested chemicals.
- Existing methods are low-throughput, hindering comprehensive assessment of potential human health risks from widespread chemical exposure.
- Over 80,000 chemicals lack adequate toxicity data, posing a significant public health challenge.
Purpose of the Study:
- To develop and implement novel, high-throughput, cell-based assays for toxicity testing.
- To accelerate the assessment of chemical compound toxicity using predictive assays focused on biological pathways.
- To create a more rational, risk-based approach for chemical prioritization and human toxicity prediction.
Main Methods:
- Utilizing predictive, high-throughput, cell-based assays of human origin.
- Evaluating perturbations in key biological pathways, termed pathways of toxicity.
- Conducting targeted testing against identified toxicity pathways for efficient screening.
Main Results:
- The proposed methods significantly accelerate the ability to test large numbers of chemical compounds.
- The new approach provides test results that are more predictive of human toxicity compared to traditional methods.
- Development of tools for pathway mapping, annotation, and validation is underway.
Conclusions:
- High-throughput, cell-based assays offer a more efficient and predictive alternative to traditional toxicity testing.
- Systems toxicology approaches, like the Human Toxome project, are crucial for understanding and mitigating chemical risks.
- This research aims to build a knowledge base for sharing information on chemical toxicity pathways.
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