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Metabolic enzyme expression highlights a key role for MTHFD2 and the mitochondrial folate pathway in cancer
Roland Nilsson1, Mohit Jain2, Nikhil Madhusudhan3
11] Unit of Computational Medicine, Department of Medicine, Karolinska Institutet, 17176 Stockholm, Sweden [2] Center for Molecular Medicine, Karolinska Institutet, 17176 Stockholm, Sweden [3].
Abstract:
Metabolic remodeling is now widely regarded as a hallmark of cancer, but it is not clear whether individual metabolic strategies are frequently exploited by many tumours. Here we compare messenger RNA profiles of 1,454 metabolic enzymes across 1,981 tumours spanning 19 cancer types to identify enzymes that are consistently differentially expressed. Our meta-analysis recovers established targets of some of the most widely used chemotherapeutics, including dihydrofolate reductase, thymidylate synthase and ribonucleotide reductase, while also spotlighting new enzymes, such as the mitochondrial proline biosynthetic enzyme PYCR1. The highest scoring pathway is mitochondrial one-carbon metabolism and is centred on MTHFD2. MTHFD2 RNA and protein are markedly elevated in many cancers and correlated with poor survival in breast cancer. MTHFD2 is expressed in the developing embryo, but is absent in most healthy adult tissues, even those that are proliferating. Our study highlights the importance of mitochondrial compartmentalization of one-carbon metabolism in cancer and raises important therapeutic hypotheses.
Insights
This study analyzed metabolic enzyme expression across 19 cancer types, identifying MTHFD2 in mitochondrial one-carbon metabolism as a key enzyme frequently upregulated in cancer and linked to poor survival.
Area of Science:
- Oncology
- Metabolic pathways
- Cancer biology
Background:
- Metabolic remodeling is a recognized hallmark of cancer.
- The specific metabolic strategies frequently exploited by diverse tumors remain unclear.
- Understanding cancer-specific metabolic alterations is crucial for therapeutic development.
Purpose of the Study:
- To identify consistently differentially expressed metabolic enzymes across a wide range of cancer types.
- To investigate the role of specific metabolic pathways, particularly mitochondrial one-carbon metabolism, in cancer.
- To uncover potential new therapeutic targets in cancer metabolism.
Main Methods:
- Meta-analysis of messenger RNA (mRNA) profiles for 1,454 metabolic enzymes.
- Analysis across 1,981 tumors representing 19 distinct cancer types.
- Correlation of enzyme expression with patient survival data, specifically in breast cancer.
Main Results:
- Identified consistently differentially expressed metabolic enzymes, including known chemotherapeutic targets like dihydrofolate reductase.
- Highlighted novel enzymes such as PYCR1 (proline biosynthesis) and MTHFD2 (mitochondrial one-carbon metabolism).
- MTHFD2 was found to be markedly elevated in many cancers, associated with poor survival in breast cancer, and absent in most healthy adult tissues.
Conclusions:
- MTHFD2 is a promising cancer-specific target due to its elevated expression in tumors and association with poor prognosis.
- Mitochondrial compartmentalization of one-carbon metabolism plays a significant role in cancer.
- The findings provide a strong basis for developing novel therapeutic strategies targeting cancer metabolism.
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