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Updated: May 3, 2026

Whole-cell Super-Resolution Imaging via DNA-PAINT on a Spinning Disk Confocal with Optical Photon Reassignment
Published on: January 6, 2026
Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and Exchange-PAINT.
Ralf Jungmann1, Maier S Avendaño1, Johannes B Woehrstein2
11] Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts, USA. [2] Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, USA. [3].
Multiplexed super-resolution microscopy is now easier using DNA-PAINT and Exchange-PAINT techniques. These methods enable high-resolution imaging of multiple targets in vitro and in fixed cells with improved simplicity and efficiency.
Area of Science:
- Biophysics
- Molecular Biology
- Nanotechnology
Background:
- Super-resolution fluorescence microscopy offers high-resolution biological imaging.
- Multiplexed imaging for numerous targets is a significant challenge in the field.
- Existing methods often require complex setups or multiple dyes and lasers.
Purpose of the Study:
- To develop a simple and effective method for multiplexed super-resolution imaging.
- To achieve sub-10-nm spatial resolution in biological samples.
- To demonstrate multicolor imaging capabilities in vitro and in fixed cells.
Main Methods:
- Utilized transient binding of short fluorescently labeled oligonucleotides (DNA-PAINT).
- Developed a sequential imaging approach (Exchange-PAINT) using a single dye and laser.
- Applied these techniques to synthetic DNA structures and fixed biological cells.
Main Results:
- Achieved sub-10-nm spatial resolution in vitro.
- Demonstrated ten-color super-resolution imaging on synthetic DNA structures.
- Successfully performed four-color 2D and three-color 3D imaging of proteins in fixed cells.
Conclusions:
- DNA-PAINT and Exchange-PAINT offer a simplified approach to multiplexed super-resolution microscopy.
- These methods are versatile, enabling high-resolution imaging across various biological contexts.
- The techniques pave the way for more detailed investigations of complex biological systems.
Related Concept Videos
Super-resolution Fluorescence Microscopy
Three-Dimensional Microscopy in Microbiology

