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Published on: August 15, 2019
Allelic background of LEPRE1 mutations that cause recessive forms of osteogenesis imperfecta in different populations
Melanie G Pepin1, Ulrike Schwarze1, Virendra Singh2
1Department of Pathology, University of Washington Seattle, Washington.
Insights
Biallelic LEPRE1 mutations cause severe osteogenesis imperfecta (OI). A common mutation in African Americans, originating from West Africa, has a carrier frequency of 1/240 and is not linked to neonatal deaths in Tobago.
Area of Science:
- Genetics
- Molecular Biology
- Human Population Studies
Background:
- Biallelic mutations in the LEPRE1 gene cause recessively inherited osteogenesis imperfecta (OI), frequently leading to perinatal lethality.
- A specific LEPRE1 mutation (c.1080+1G>T) is prevalent in African Americans, with origins traced to West African populations in Ghana and Nigeria.
Purpose of the Study:
- To investigate the carrier frequency of the c.1080+1G>T LEPRE1 mutation in an African-derived population in Tobago.
- To explore LEPRE1 allelic diversity within this population and its potential contribution to OI.
- To correlate identified LEPRE1 mutations with clinical outcomes in individuals with OI.
Main Methods:
- Population-based carrier frequency analysis of the c.1080+1G>T LEPRE1 mutation in 200 Tobago samples.
- Review of neonatal death records in Trinidad over a 3-year period.
- Sequence analysis to identify LEPRE1 allelic variants and mutations in individuals with OI.
Main Results:
- The carrier frequency of c.1080+1G>T in Tobago was approximately 1/200 and did not correlate with recorded neonatal deaths.
- High LEPRE1 allelic diversity (11 variants) was observed in Tobago, reflecting ancestral origins.
- Identified mutations in 44 OI patients occurred on seven of these 11 variant alleles, often causing mRNA or protein instability.
Conclusions:
- The c.1080+1G>T LEPRE1 mutation does not appear to significantly impact neonatal mortality in Tobago.
- High LEPRE1 allelic diversity in Tobago suggests complex population genetics and potential founder effects.
- Unidentified missense mutations in LEPRE1 may contribute to milder forms of osteogenesis imperfecta.
Abstract:
Biallelic mutations in LEPRE1 result in recessively inherited forms of osteogenesis imperfecta (OI) that are often lethal in the perinatal period. A mutation (c.1080+1G>T, IVS5+1G>T) in African Americans has a carrier frequency of about 1/240. The mutant allele originated in West Africa in tribes of Ghana and Nigeria where the carrier frequencies are 2% and 5%. By examining 200 samples from an African-derived population in Tobago and reviewing hospital neonatal death records, we determined that the carrier frequency of c.1080+1G>T was about one in 200 and did not contribute to the neonatal deaths recorded over a 3-year period of time in Trinidad. In the course of sequence analysis, we found surprisingly high LEPRE1 allelic diversity in the Tobago DNA samples in which there were 11 alleles distinguished by a single basepair variant in or near exon 5. All the alleles found in the Tobago population that were within the sequence analysis region were found in the African American population in the Exome Variant Project. This diversity appeared to reflect the geographic origin of the original population in Tobago. In 44 individuals with biallelic LEPRE1 mutations identified by clinical diagnostic testing, we found the sequence alterations occurred on seven of the 11 variant alleles. All but one of the mutations identified resulted in mRNA or protein instability for the majority of the transcripts from the altered allele. These findings suggest that the milder end of the clinical spectrum could be due to as yet unidentified missense mutations in LEPRE1.
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