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Updated: May 3, 2026

Isolation and Profiling of MicroRNA-containing Exosomes from Human Bile
Published on: June 13, 2016
Exploration of microRNAs in porcine milk exosomes
Ting Chen, Qian-Yun Xi, Rui-Song Ye
1Guandong Provincial Key Lab of Agro-Animal Genomics And Molecular Breeding, College of Animal Science, ALLTECH-SCAU Animal Nutrition Control Research Alliance, National Engineering Research Center For Breeding Swine Industry, South China Agricultural University, Guangzhou 510642, China. Zhangyl@scau.edu.cn.
Background:
Breast milk contains complex nutrients and facilitates the maturation of various biological systems in infants. Exosomes, membranous vesicles of endocytic origin found in different body fluids such as milk, can mediate intercellular communication. We hypothesized that microRNAs (miRNAs), a class of non-coding small RNAs of 18-25 nt which are known to be packaged in exosomes of human, bovine and porcine milk, may play important roles in the development of piglets.
Results:
In this study, exosomes of approximately 100 nm in diameter were isolated from porcine milk through serial centrifugation and ultracentrifugation procedures. Total RNA was extracted from exosomes, and 5S ribosomal RNA was found to be the major RNA component. Solexa sequencing showed a total of 491 miRNAs, including 176 known miRNAs and 315 novel mature miRNAs (representing 366 pre-miRNAs), which were distributed among 30 clusters and 35 families, and two predicted novel miRNAs were verified targeting 3'UTR of IGF-1R by luciferase assay. Interestingly, we observed that three miRNAs (ssc-let-7e, ssc-miR-27a, and ssc-miR-30a) could be generated from miRNA-offset RNAs (moRNAs). The top 10 miRNAs accounted for 74.5% (67,154 counts) of total counts, which were predicted to target 2,333 genes by RNAhybrid software. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses using DAVID bioinformatics resources indicated that the identified miRNAs targeted genes enriched in transcription, immunity and metabolism processes, and 14 of the top 20 miRNAs possibly participate in regulation of the IgA immune network.
Conclusions:
Our findings suggest that porcine milk exosomes contain a large number of miRNAs, which potentially play an important role in information transfer from sow milk to piglets. The predicted miRNAs of porcine milk exosomes in this study provide a basis for future biochemical and biophysical function studies.
Insights
Porcine milk exosomes contain microRNAs (miRNAs) that may transfer information crucial for piglet development. This study identified numerous known and novel miRNAs, suggesting their role in piglet growth and immunity.
Area of Science:
- Biochemistry
- Molecular Biology
- Animal Science
Background:
- Breast milk is vital for infant development, containing exosomes that mediate intercellular communication.
- Exosomes in milk are known to carry microRNAs (miRNAs), small non-coding RNAs involved in gene regulation.
- The role of porcine milk exosome-derived miRNAs in piglet development is largely unexplored.
Purpose of the Study:
- To investigate the presence and characteristics of miRNAs within exosomes isolated from porcine milk.
- To identify known and novel miRNAs and predict their potential targets and functions in piglets.
Main Methods:
- Isolation of exosomes from porcine milk using serial centrifugation and ultracentrifugation.
- RNA extraction from exosomes followed by Solexa sequencing for miRNA profiling.
- Bioinformatic analyses including target prediction (RNAhybrid) and functional enrichment (DAVID, KEGG).
Main Results:
- Exosomes of approximately 100 nm in diameter were isolated, with 5S ribosomal RNA as the major RNA component.
- A total of 491 miRNAs were identified, including 176 known and 315 novel miRNAs.
- Top miRNAs target genes involved in transcription, immunity, and metabolism, with potential roles in the IgA immune network.
Conclusions:
- Porcine milk exosomes are rich in diverse miRNAs, suggesting a significant role in sow-to-piglet information transfer.
- The identified miRNAs provide a foundation for understanding their functional impact on piglet development and health.
- Further research is warranted to elucidate the specific biochemical and biophysical functions of these exosomal miRNAs.
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