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Updated: May 3, 2026

"Cell Surface Capture" Workflow for Label-Free Quantification of the Cell Surface Proteome
Published on: March 24, 2023
Quantitative analysis of surface expression of membrane proteins using cold-adapted proteases
Faraz Ahmad1, Kai Kaila1, Peter Blaesse1,2
1Department of Biosciences and Neuroscience Center, University of Helsinki, Helsinki, Finland.
Abstract:
This unit presents an improved method for quantitative analysis of surface expression of membrane proteins utilizing a cold-adapted trypsin. Preservation of the proteolytic activity of the enzyme at 0° to 4°C allows cleavage of surface-expressed membrane proteins at temperatures at which trafficking of the mammalian plasmalemmal proteins is blocked. This provides an important advantage over established trypsin-cleavage protocols since it can be applied to membrane proteins with a fast turnover rate of the membrane pool and a fast recycling rate. Compared to surface biotinylation, the method is less time consuming.

