Related Experiment Video
Updated: May 3, 2026

Isolation of Double Negative αβ T Cells from the Kidney
Published on: May 16, 2014
Cernunnos/XLF Deficiency: A Syndromic Primary Immunodeficiency
Funda Erol Cipe1, Cigdem Aydogmus1, Arzu Babayigit Hocaoglu1
1Department of Pediatric Allergy-Immunology, Kanuni Sultan Suleyman Research and Training Hospital, 34303 Istanbul, Turkey.
Cernunnos/XLF deficiency, a rare primary immunodeficiency, causes severe growth issues and radiosensitive SCID. Genetic testing identified a homozygous mutation in the Cernunnos/XLF gene (NHEJ1) in a young patient, guiding treatment.
Area of Science:
- Genetics
- Immunology
- Molecular Biology
Background:
- Nonhomologous end joining (NHEJ) pathway DNA repair genes, including Artemis, DNA ligase IV, DNA protein kinase catalytic subunit, and Cernunnos/XLF, are crucial for radiosensitive severe combined immunodeficiency (SCID).
- Clinical presentation of a 3-year-old girl included severe growth retardation, distinctive facial features, recurrent infections, pancytopenia, and polydactyly, initially suggesting Fanconi anemia.
Purpose of the Study:
- To investigate the genetic basis of primary immunodeficiency in a pediatric patient with complex clinical symptoms.
- To identify the specific gene mutation responsible for the patient's radiosensitive SCID and associated features.
Main Methods:
- Chromosomal analysis to detect spontaneous DNA breaks.
- Differential-ly enhanced breakage (DEB) test to exclude Fanconi anemia.
- Genetic analysis, including mutation screening of the NBS1 gene and subsequent investigation of the Cernunnos/XLF (NHEJ1) gene.
Main Results:
- Fanconi anemia was excluded due to a normal DEB test.
- The patient exhibited hypogammaglobulinemia (low IgG, IgA) and B cell absence, indicative of primary immunodeficiency.
- A homozygous mutation in the Cernunnos/XLF (NHEJ1) gene was identified as the cause of the patient's condition.
Conclusions:
- Cernunnos/XLF deficiency is a significant cause of radiosensitive SCID, presenting with microcephaly, distinctive facial features, and severe growth retardation.
- Early evaluation for hypogammaglobulinemia and primary immunodeficiency is recommended for patients with these clinical characteristics.
- Intravenous immunoglobulin (IVIG) prophylaxis is initiated, and bone marrow transplantation is being pursued as a curative treatment.
Related Concept Videos
Immunodeficiency Diseases
There are three main causes of immunodeficiency...
Inflammatory Bowel Disease III: Crohn's Disease
Primary Lymphoid Organs
The red bone marrow is a soft, spongy tissue nestled in the interior of long bones such as the humerus and femur. It is the site...
Inflammatory Bowel Disease II: Crohn's Disease
Inflammatory bowel disease, commonly known as IBD, refers to a collection of disorders that lead to persistent inflammation of the gastrointestinal tract. The two types of IBD are ulcerative colitis, which impacts the colon, and Crohn's disease, which can involve any part of the gastrointestinal segment.
Crohn's disease
Crohn's disease is a chronic, systemic inflammatory bowel disease (IBD) that predominantly affects the gastrointestinal tract. It is marked by...
Chronic Bowel Disorders: Introduction
Irritable Bowel Syndrome (IBS) is a common disorder affecting the gastrointestinal tract. The distinctive feature is recurrent abdominal pain associated with altered bowel movements, manifesting as constipation, diarrhea, or fluctuating between both. The...
Inflammatory Bowel Disease II: Ulcerative Colitis

