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Updated: May 3, 2026

In Vitro Transcribed RNA-based Luciferase Reporter Assay to Study Translation Regulation in Poxvirus-infected Cells
Published on: May 1, 2019
HIV-1 transcripts use IRES-initiation under conditions where Cap-dependent translation is restricted by poliovirus 2A
Raquel Amorim1, Sara Mesquita Costa1, Nathalia Pereira Cavaleiro1
1Instituto de Microbiologia, Departamento de Virologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Abstract:
The 30 different species of mRNAs synthesized during the HIV-1 replication cycle are all capped and polyadenilated. Internal ribosome entry sites have been recognized in the 5' untranslated region of some mRNA species of HIV-1, which would contribute to an alternative mechanism of initiation of mRNA translation. However, the Cap-dependent translation is assumed to be the main mechanism driving the initiation of HIV-1 protein synthesis. In this work, we describe a cell system in which lower to higher levels of transient expression of the poliovirus 2A protease strongly inhibited cellular Cap-dependent translation with no toxic effect to the cells during a 72-hour time frame. In this system, the synthesis of HIV-1 proteins was inhibited in a temporal dose-dependent way. Higher levels of 2A protease expression severely inhibited HIV-1 protein synthesis during the first 24 hours of infection consequently inhibiting viral production and infectivity. Intermediate to lower levels of 2A Protease expression caused the inhibition of viral protein synthesis only during the first 48 hours of viral replication. After this period both protein synthesis and viral release were recovered to the control levels. However, the infectivity of viral progeny was still partially inhibited. These results indicate that two mechanisms of mRNA translation initiation contribute to the synthesis of HIV-1 proteins; during the first 24-48 hours of viral replication HIV-1 protein synthesis is strongly dependent on Cap-initiation, while at later time points IRES-driven translation initiation is sufficient to produce high amounts of viral particles.
Insights
Poliovirus 2A protease inhibits HIV-1 protein synthesis by blocking cap-dependent translation. This reveals two distinct translation mechanisms driving HIV-1 replication, with IRES-driven translation becoming dominant later in infection.
Area of Science:
- Virology
- Molecular Biology
- Cellular Biology
Background:
- Human Immunodeficiency Virus type 1 (HIV-1) replication involves synthesizing numerous mRNA species.
- Cap-dependent translation is considered the primary mechanism for initiating HIV-1 protein synthesis.
- Internal Ribosome Entry Sites (IRES) in HIV-1 mRNA suggest alternative translation initiation pathways.
Purpose of the Study:
- To investigate the role of cap-dependent translation in HIV-1 protein synthesis.
- To explore the impact of poliovirus 2A protease on HIV-1 replication.
- To elucidate the contribution of different translation initiation mechanisms during HIV-1 infection.
Main Methods:
- Utilized a cell system with transient expression of poliovirus 2A protease.
- Assessed the effect of varying protease levels on cellular cap-dependent translation.
- Monitored HIV-1 protein synthesis, viral production, and infectivity over time.
Main Results:
- Poliovirus 2A protease inhibited cellular cap-dependent translation without toxicity.
- HIV-1 protein synthesis was temporally and dose-dependently inhibited by the protease.
- Higher protease levels severely inhibited early viral protein synthesis and production; lower levels caused transient inhibition, with later recovery of protein synthesis and viral release but partial loss of infectivity.
Conclusions:
- HIV-1 protein synthesis relies on both cap-dependent and IRES-driven translation.
- Cap-dependent translation is crucial during the initial 24-48 hours of HIV-1 replication.
- IRES-driven translation becomes sufficient for high viral particle production at later stages.
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