Chromatin-regulating proteins as targets for cancer therapy
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Updated: May 3, 2026

An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues
Published on: April 5, 2018
Takahiro Oike1, Hideaki Ogiwara2, Napapat Amornwichet3
1Division of Genome Biology, National Cancer Center Research Institute, 1-1, Tsukiji 5-chome, Chuo-ku, Tokyo 104-0045, Japan Department of Radiation Oncology, Gunma University Graduate School of Medicine, 3-39-22, Showa-machi, Maebashi, Gunma 371-8511, Japan.
Abstract:
Chromatin-regulating proteins represent a large class of novel targets for cancer therapy. In the context of radiotherapy, acetylation and deacetylation of histones by histone acetyltransferases (HATs) and histone deacetylases (HDACs) play important roles in the repair of DNA double-strand breaks generated by ionizing irradiation, and are therefore attractive targets for radiosensitization. Small-molecule inhibitors of HATs (garcinol, anacardic acid and curcumin) and HDACs (vorinostat, sodium butyrate and valproic acid) have been shown to sensitize cancer cells to ionizing irradiation in preclinical models, and some of these molecules are being tested in clinical trials, either alone or in combination with radiotherapy. Meanwhile, recent large-scale genome analyses have identified frequent mutations in genes encoding chromatin-regulating proteins, especially in those encoding subunits of the SWI/SNF chromatin-remodeling complex, in various human cancers. These observations have driven researchers toward development of targeted therapies against cancers carrying these mutations. DOT1L inhibition in MLL-rearranged leukemia, EZH2 inhibition in EZH2-mutant or MLL-rearranged hematologic malignancies and SNF5-deficient tumors, BRD4 inhibition in various hematologic malignancies, and BRM inhibition in BRG1-deficient tumors have demonstrated promising anti-tumor effects in preclinical models, and these strategies are currently awaiting clinical application. Overall, the data collected so far suggest that targeting chromatin-regulating proteins is a promising strategy for tomorrow's cancer therapy, including radiotherapy and molecularly targeted chemotherapy.
Insights
Targeting chromatin-regulating proteins offers a promising avenue for cancer therapy. Inhibitors of histone acetyltransferases (HATs) and histone deacetylases (HDACs) show potential in radiosensitization, while targeting specific mutations in chromatin remodelers is a focus for new cancer treatments.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genetics
Background:
- Chromatin-regulating proteins are crucial in DNA repair and cancer development.
- Histone acetyltransferases (HATs) and histone deacetylases (HDACs) influence DNA repair after irradiation.
- Mutations in chromatin-remodeling complexes are common in various human cancers.
Purpose of the Study:
- To review the therapeutic potential of targeting chromatin-regulating proteins in cancer.
- To highlight the role of HATs and HDACs in radiosensitization.
- To discuss emerging targeted therapies for cancers with specific chromatin-related mutations.
Main Methods:
- Review of preclinical and clinical studies on chromatin-regulating protein inhibitors.
- Analysis of large-scale genome data identifying mutations in chromatin-remodeling genes.
- Preclinical evaluation of targeted inhibitors like DOT1L, EZH2, BRD4, and BRM inhibitors.
Main Results:
- Small-molecule HAT and HDAC inhibitors sensitize cancer cells to ionizing irradiation.
- Several inhibitors are in clinical trials for combination therapy with radiotherapy.
- Targeted inhibition of DOT1L, EZH2, BRD4, and BRM shows significant anti-tumor effects in preclinical models for specific cancer types.
Conclusions:
- Targeting chromatin-regulating proteins is a promising strategy for novel cancer therapies.
- Inhibitors of HATs and HDACs offer potential for radiosensitization.
- Targeted therapies against specific chromatin-related mutations represent a future direction in cancer treatment.
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