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Updated: May 2, 2026

qKAT: Quantitative Semi-automated Typing of Killer-cell Immunoglobulin-like Receptor Genes
Published on: March 6, 2019
Activating killer cell immunoglobulin-like receptor 2DS2 binds to HLA-A*11
Jingxian Liu1, Ziwei Xiao, Hui Ling Ko
1Singapore Immunology Network, Agency for Science, Technology and Research, Singapore 138648.
Researchers identified HLA-A*11:01 as the ligand for the activating killer cell Ig-like receptor (KIR) 2DS2. This finding clarifies KIR-HLA interactions and provides structural insights into immune recognition.
Area of Science:
- Immunology
- Structural Biology
- Molecular Interactions
Background:
- Killer cell Ig-like receptors (KIRs) are crucial immune receptors involved in natural killer cell regulation.
- While inhibitory KIRs primarily recognize HLA-C and Bw4 group ligands, the ligands for activating KIRs, like KIR2DS2, remain largely unknown.
Purpose of the Study:
- To identify the specific ligand for the activating KIR2DS2.
- To elucidate the structural basis of KIR2DS2-ligand interaction.
- To understand the influence of peptide sequence on KIR-HLA binding.
Main Methods:
- X-ray crystallography to determine the structure of the KIR2DS2-HLA-A*11:01 complex.
- KIR2DS2 tetramer staining to assess binding to live cells expressing HLA-A*11:01.
- Heteronuclear single quantum coherence Nuclear Magnetic Resonance (NMR) spectroscopy to map binding interfaces.
Main Results:
- HLA-A*11:01 was identified as the cognate ligand for the activating KIR2DS2.
- The crystal structure revealed distinct binding characteristics compared to inhibitory KIR-HLA interactions, highlighting the roles of Tyr45 and Asp72 in specificity.
- Binding to live cells was confirmed, and peptide residue changes at p8 were shown to modulate KIR-HLA association.
- NMR data validated the structural findings and identified critical residues at the KIR-HLA interface.
Conclusions:
- This study provides the first structural evidence for the recognition of HLA-A*11:01 by the activating KIR2DS2.
- The findings expand the known spectrum of KIR-HLA interactions and offer insights into immune synapse formation.
- Understanding these interactions is vital for fields like transplantation immunology and cancer immunotherapy.
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