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Oncogenic RET kinase domain mutations perturb the autophosphorylation trajectory by enhancing substrate presentation
Iván Plaza-Menacho1, Karin Barnouin2, Kerry Goodman1
1Structural Biology Laboratory, London Research Institute, Cancer Research UK, WC2A 3LY London, UK.
Abstract:
To decipher the molecular basis for RET kinase activation and oncogenic deregulation, we defined the temporal sequence of RET autophosphorylation by label-free quantitative mass spectrometry. Early autophosphorylation sites map to regions flanking the kinase domain core, while sites within the activation loop only form at later time points. Comparison with oncogenic RET kinase revealed that late autophosphorylation sites become phosphorylated much earlier than wild-type RET, which is due to a combination of an enhanced enzymatic activity, increased ATP affinity, and surprisingly, by providing a better intermolecular substrate. Structural analysis of oncogenic M918T and wild-type RET kinase domains reveal a cis-inhibitory mechanism involving tethering contacts between the glycine-rich loop, activation loop, and αC-helix. Tether mutations only affected substrate presentation but perturbed the autophosphorylation trajectory similar to oncogenic mutations. This study reveals an unappreciated role for oncogenic RET kinase mutations in promoting intermolecular autophosphorylation by enhancing substrate presentation.
Insights
Oncogenic RET kinase mutations accelerate autophosphorylation by improving intermolecular substrate presentation, revealing a new mechanism for cancer development. This study clarifies RET kinase activation and deregulation.
Area of Science:
- Molecular biology
- Biochemistry
- Cancer research
Background:
- RET kinase is crucial in development and cancer.
- Understanding RET kinase activation and oncogenic deregulation is key to targeted therapies.
Purpose of the Study:
- To elucidate the molecular mechanisms of RET kinase activation and oncogenic deregulation.
- To define the temporal sequence of RET autophosphorylation and its modulation by oncogenic mutations.
Main Methods:
- Label-free quantitative mass spectrometry to determine temporal autophosphorylation sites.
- Biochemical assays to assess enzymatic activity and ATP affinity.
- Structural analysis of wild-type and oncogenic RET kinase domains.
Main Results:
- Early autophosphorylation sites are distinct from late sites within the activation loop.
- Oncogenic RET kinase exhibits enhanced enzymatic activity, increased ATP affinity, and improved intermolecular substrate presentation.
- Structural analysis revealed a cis-inhibitory mechanism involving specific loop and helix contacts in wild-type RET.
- Tether mutations mimicked oncogenic effects on autophosphorylation trajectory by altering substrate presentation.
Conclusions:
- Oncogenic RET kinase mutations promote intermolecular autophosphorylation by enhancing substrate presentation.
- A cis-inhibitory mechanism regulates wild-type RET kinase activity.
- These findings offer new insights into RET-driven oncogenesis and potential therapeutic strategies.
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