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Updated: May 2, 2026

Measurement of mRNA Decay Rates in Saccharomyces cerevisiae Using rpb1-1 Strains
Published on: December 13, 2014
Yeast telomere maintenance is globally controlled by programmed ribosomal frameshifting and the nonsense-mediated
Vivek M Advani1, Ashton T Belew1, Jonathan D Dinman1
1Department of Cell Biology and Molecular Genetics; University of Maryland; College Park MD, USA.
Abstract:
We have previously shown that ~10% of all eukaryotic mRNAs contain potential programmed -1 ribosomal frameshifting (-1 PRF) signals and that some function as mRNA destabilizing elements through the Nonsense-Mediated mRNA Decay (NMD) pathway by directing translating ribosomes to premature termination codons. Here, the connection between -1 PRF, NMD and telomere end maintenance are explored. Functional -1 PRF signals were identified in the mRNAs encoding two components of yeast telomerase, EST1 and EST2, and in mRNAs encoding proteins involved in recruiting telomerase to chromosome ends, STN1 and CDC13. All of these elements responded to mutants and drugs previously known to stimulate or inhibit -1 PRF, further supporting the hypothesis that they promote -1 PRF through the canonical mechanism. All affected the steady-state abundance of a reporter mRNA and the wide range of -1 PRF efficiencies promoted by these elements enabled the determination of an inverse logarithmic relationship between -1 PRF efficiency and mRNA accumulation. Steady-state abundances of the endogenous EST1, EST2, STN1 and CDC13 mRNAs were similarly inversely proportional to changes in -1 PRF efficiency promoted by mutants and drugs, supporting the hypothesis that expression of these genes is post-transcriptionally controlled by -1 PRF under native conditions. Overexpression of EST2 by ablation of -1 PRF signals or inhibition of NMD promoted formation of shorter telomeres and accumulation of large budded cells at the G2/M boundary. A model is presented describing how limitation and maintenance of correct stoichiometries of telomerase components by -1 PRF is used to maintain yeast telomere length.
Insights
Programmed -1 ribosomal frameshifting (-1 PRF) regulates yeast telomere length by controlling telomerase gene expression. This mechanism ensures proper telomere maintenance and cell cycle progression.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- ~10% of eukaryotic mRNAs have programmed -1 ribosomal frameshifting (-1 PRF) signals.
- Some -1 PRF signals destabilize mRNA via Nonsense-Mediated mRNA Decay (NMD), leading to premature termination codons.
Purpose of the Study:
- To explore the connection between -1 PRF, NMD, and telomere maintenance in yeast.
- To investigate the role of -1 PRF in regulating telomerase component gene expression.
Main Methods:
- Identified functional -1 PRF signals in yeast telomerase component mRNAs (EST1, EST2) and telomere recruitment factors (STN1, CDC13).
- Assessed the impact of mutations and drugs on -1 PRF efficiency and reporter mRNA abundance.
- Analyzed the effect of ablating -1 PRF signals or inhibiting NMD on telomere length and cell cycle.
Main Results:
- -1 PRF signals were confirmed in EST1, EST2, STN1, and CDC13 mRNAs, responding to known modulators of -1 PRF.
- An inverse logarithmic relationship was found between -1 PRF efficiency and mRNA accumulation.
- Overexpression of EST2, due to -1 PRF ablation or NMD inhibition, resulted in shorter telomeres and G2/M cell cycle arrest.
Conclusions:
- -1 PRF post-transcriptionally controls the expression of key telomerase genes in yeast.
- This regulatory mechanism maintains correct stoichiometries of telomerase components, essential for yeast telomere length maintenance.
- Dysregulation of -1 PRF impacts telomere length and cell cycle progression.
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