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Updated: Aug 25, 2026

Genotypic Inference of HIV-1 Tropism Using Population-based Sequencing of V3
Published on: December 27, 2010
Two major mumps genotype G variants dominated recent mumps outbreaks in the Netherlands (2009-2012)
Sigrid Gouma1,2, Jussi Sane3,2, Daphne Gijselaar2
1Virology Department, Erasmus Medical Centre, 3015 GE Rotterdam, The Netherlands.
Abstract:
During three seasons of mumps outbreaks in the Netherlands (September 2009-August 2012), 822 mumps cases were laboratory-confirmed at the National Institute for Public Health and the Environment (RIVM). Most patients were vaccinated young adults. Given the protracted endemic circulation, we studied the genetic diversity and changes of mumps virus over a period of 3 years. Phylogenetic analysis of the small hydrophobic (SH) gene (316 bp) was performed on a representative set of 808 specimens that tested positive for mumps via PCR. Additionally, the haemagglutinin/neuraminidase (HN) gene (1749 bp) and fusion (F) gene (1617 bp) were sequenced for a subset of samples (n = 17). Correlations between different sequence types and epidemiological and clinical data were investigated. The outbreaks in the Netherlands were dominated by two SH gene sequence types within genotype G, termed MuVs/Delft.NLD/03.10 (variant 1) and MuVs/Scheemda.NLD/12.10 (variant 2). Sequence analysis of the HN and F genes indicated that the outbreaks were initiated by separately introduced genetic lineages. The predominance of variant 2 by the end of the first outbreak season could not be explained by any of the epidemiological factors investigated. Orchitis was more frequently reported in males infected with variant 2, irrespective of age and vaccination status. These findings illustrate genetic heterogeneity of an emerging mumps genotype, and raise questions about the mechanisms driving mumps epidemiology and immunity in relation to vaccination.
Insights
Two mumps virus variants circulated in the Netherlands between 2009-2012, predominantly affecting vaccinated young adults. Variant 2 was linked to higher rates of orchitis in males.
Area of Science:
- Virology
- Epidemiology
- Public Health
Background:
- Mumps outbreaks occurred in the Netherlands from 2009-2012, with most cases in vaccinated young adults.
- Protracted endemic circulation of mumps virus prompted an investigation into its genetic diversity.
Purpose of the Study:
- To analyze the genetic diversity and changes of mumps virus over three years of outbreaks.
- To investigate correlations between mumps virus genetic variants and epidemiological/clinical data.
Main Methods:
- Phylogenetic analysis of the small hydrophobic (SH) gene from 808 mumps cases.
- Sequencing of haemagglutinin/neuraminidase (HN) and fusion (F) genes for a subset of samples.
- Correlation analysis with epidemiological and clinical data.
Main Results:
- Two SH gene sequence types within genotype G, MuVs/Delft.NLD/03.10 (variant 1) and MuVs/Scheemda.NLD/12.10 (variant 2), dominated the outbreaks.
- HN and F gene analysis indicated separate introductions of genetic lineages.
- Variant 2 predominance was unexplained by investigated factors; it was associated with increased orchitis in males.
Conclusions:
- The mumps outbreaks were driven by genetically heterogeneous strains within an emerging genotype.
- Findings raise questions about the drivers of mumps epidemiology and vaccine effectiveness.
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