Related Experiment Video
Updated: May 2, 2026

Profiling Ubiquitin and Ubiquitin-like Dependent Post-translational Modifications and Identification of Significant Alterations
Published on: November 7, 2019
Gene expression profiling in tibial muscular dystrophy reveals unfolded protein response and altered autophagy
Mark Screen1, Olayinka Raheem2, Jeanette Holmlund-Hampf1
1Folkhälsan Institute of Genetics and Department of Medical Genetics, Haartman Institute, University of Helsinki, Helsinki, Finland.
Abstract:
Tibial muscular dystrophy (TMD) is a late onset, autosomal dominant distal myopathy that results from mutations in the two last domains of titin. The cascade of molecular events leading from the causative Titin mutations to the preterm death of muscle cells in TMD is largely unknown. In this study we examined the mRNA and protein changes associated with the myopathology of TMD. To identify these components we performed gene expression profiling using muscle biopsies from TMD patients and healthy controls. The profiling results were confirmed through quantitative real-time PCR and protein level analysis. One of the pathways identified was activation of endoplasmic reticulum (ER) stress response. ER stress activates the unfolded protein response (UPR) pathway. UPR activation was supported by elevation of the marker genes HSPA5, ERN1 and the UPR specific XBP1 splice form. However, UPR activation appears to be insufficient to correct the protein abnormalities causing its activation because degenerative TMD muscle fibres show an increase in ubiquitinated protein inclusions. Abnormalities of VCP-associated degradation pathways are also suggested by the presence of proteolytic VCP fragments in western blotting, and VCP's accumulation within rimmed vacuoles in TMD muscle fibres together with p62 and LC3B positive autophagosomes. Thus, pathways controlling turnover and degradation, including autophagy, are distorted and lead to degeneration and loss of muscle fibres.
Insights
Tibial muscular dystrophy (TMD) involves titin gene mutations, leading to muscle cell death. This study reveals endoplasmic reticulum stress and impaired protein degradation pathways contribute to TMD myopathology.
Area of Science:
- Muscle biology
- Molecular genetics
- Cellular pathology
Background:
- Tibial muscular dystrophy (TMD) is a late-onset, autosomal dominant distal myopathy caused by mutations in the titin gene.
- The molecular mechanisms driving muscle cell degeneration in TMD are not fully understood.
Purpose of the Study:
- To investigate mRNA and protein alterations in TMD muscle.
- To identify molecular pathways involved in TMD myopathology.
Main Methods:
- Gene expression profiling of muscle biopsies from TMD patients and controls.
- Quantitative real-time PCR and protein level analysis for validation.
- Western blotting to detect protein fragments and inclusions.
Main Results:
- Identified activation of endoplasmic reticulum (ER) stress and the unfolded protein response (UPR) pathway, indicated by elevated marker genes (HSPA5, ERN1, XBP1s).
- Observed increased ubiquitinated protein inclusions and VCP fragments, suggesting impaired protein degradation.
- Detected VCP accumulation in rimmed vacuoles and autophagosomes (p62, LC3B positive), indicating distorted autophagy and degradation pathways.
Conclusions:
- Titin mutations in TMD trigger ER stress and UPR activation.
- Despite UPR activation, protein degradation and autophagy pathways are compromised, leading to protein aggregate accumulation.
- These cellular dysfunctions contribute significantly to muscle fiber degeneration and loss in TMD.
Related Concept Videos
The Unfolded Protein Response
Regulation of the Unfolded Protein Response
Ribosome Profiling
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Regulation of Expression at Multiple Steps

