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Updated: May 2, 2026

Genome-wide Screen for miRNA Targets Using the MISSION Target ID Library
Published on: April 6, 2012
MicroRNA-608 and microRNA-34a regulate chordoma malignancy by targeting EGFR, Bcl-xL and MET
Ying Zhang1, David Schiff2, Deric Park3
1Departments of Microbiology, Immunology and Cancer Biology, University of Virginia, Charlottesville, Virginia, United States of America.
Abstract:
Chordomas are rare malignant tumors that originate from the notochord remnants and occur in the skull base, spine and sacrum. Due to a very limited understanding of the molecular pathogenesis of chordoma, there are no adjuvant and molecular therapies besides surgical resection and radiation therapy. microRNAs (miRNAs) are small noncoding regulatory RNA molecules with critical roles in cancer. The role of miRNAs in chordomas is mostly unknown. We uncover microRNA-608 (miR-608) and microRNA-34a (miR-34a) as novel tumor suppressive microRNAs that regulate malignancy in chordoma. We find that miR-608 and miR-34a expressions are downregulated in human chordoma cell lines and primary cells at least partially via alteration of their genes' copy numbers. We identify the commonly deregulated oncogenes EGFR and Bcl-xL as direct targets of miR-608 and the receptor tyrosine kinase MET as direct target of miR-34a. We show that EGFR and MET activations promote chordoma cell proliferation and invasion and that pharmacological inhibition of EGFR and MET inhibits chordoma cell proliferation and survival. We demonstrate that restoration of miR-608 and miR-34a inhibits cell proliferation and invasion and induces apoptosis in chordoma cells. We find that miR-34a inversely correlates with MET expression and miR-608 inversely correlates with EGFR expression in chordoma cells. These findings demonstrate for the first time that miR-608 and miR-34a regulate chordoma malignancy by regulating EGFR, MET and Bcl-xL.
Insights
Novel tumor suppressive microRNAs, microRNA-608 (miR-608) and microRNA-34a (miR-34a), were identified in chordoma. Restoring these microRNAs inhibits chordoma cell proliferation and invasion, offering potential new therapeutic targets.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Chordomas are rare malignant tumors arising from notochord remnants, lacking effective adjuvant and molecular therapies beyond surgery and radiation.
- The molecular pathogenesis of chordoma remains poorly understood, highlighting a critical need for novel therapeutic targets.
- MicroRNAs (miRNAs) are key regulators in cancer, but their specific roles in chordoma are largely unexplored.
Purpose of the Study:
- To investigate the role of microRNAs in chordoma malignancy.
- To identify novel tumor suppressive miRNAs and their molecular targets in chordoma.
- To explore the therapeutic potential of restoring miRNA expression in chordoma.
Main Methods:
- Expression analysis of miR-608 and miR-34a in human chordoma cell lines and primary cells.
- Identification of direct oncogene targets (EGFR, Bcl-xL, MET) using bioinformatics and experimental validation.
- Functional studies involving restoration of miRNA expression and pharmacological inhibition of target oncogenes.
Main Results:
- miR-608 and miR-34a expression is downregulated in chordoma, partly due to copy number alterations.
- EGFR, Bcl-xL, and MET were identified as direct targets of miR-608 and miR-34a.
- Restoration of miR-608 and miR-34a inhibited chordoma cell proliferation, invasion, and induced apoptosis, while target inhibition showed similar effects.
Conclusions:
- miR-608 and miR-34a function as tumor suppressors in chordoma.
- These miRNAs regulate chordoma malignancy by targeting oncogenes EGFR, MET, and Bcl-xL.
- Restoring miR-608 and miR-34a represents a promising therapeutic strategy for chordoma.
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