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Updated: May 2, 2026

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Cardiac channelopathy testing in 274 ethnically diverse sudden unexplained deaths
Dawei Wang1, Krunal R Shah1, Sung Yon Um1
1Molecular Genetics Laboratory, New York City Office of Chief Medical Examiner, New York, NY 10016, United States.
Molecular testing for cardiac channelopathies helps determine causes of sudden unexplained deaths (SUD). This study found genetic variants in 13.5% of infants and 19.5% of non-infants, aiding investigations.
Area of Science:
- Forensic Genetics
- Cardiology
- Molecular Diagnostics
Background:
- Sudden unexplained deaths (SUD) pose challenges for medical examiners when autopsy findings are inconclusive.
- Inheritable cardiac channelopathies are implicated as a potential cause of SUD by affecting heart rhythm.
- Molecular diagnostics are increasingly recommended for SUD investigations to identify genetic predispositions.
Purpose of the Study:
- To assess the utility of cardiac channelopathy gene testing in a large cohort of autopsy-negative SUD cases.
- To identify the prevalence of known and novel channelopathy variants in diverse SUD populations.
- To evaluate the contribution of molecular testing to medicolegal death investigations.
Main Methods:
- Analysis of 274 autopsy-negative SUD cases (infants and non-infants) investigated by the NYC Office of Chief Medical Examiner (2008-2012).
- Routine molecular genetic testing for six major cardiac channelopathy genes (KCNQ1, KCNH2, SCN5A, KCNE1, KCNE2, RyR2).
- Characterization of detected variants, including previously classified and novel putative channelopathy-associated variants.
Main Results:
- Cardiac channelopathy-associated variants were identified in 13.5% of infants and 19.5% of non-infants.
- The SCN5A gene was most frequently implicated, accounting for 68.4% of infant and 50% of non-infant variants.
- African American infants showed the highest SUD risk, and African American non-infants had a significantly younger mean age-at-death.
Conclusions:
- Molecular testing for cardiac channelopathies is a valuable tool in SUD investigations.
- Genetic findings provide crucial information for medical examiners/coroners in determining cause of death.
- This testing can offer potentially life-saving information to surviving family members regarding inherited risks.
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