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A diverse array of cancer-associated MTOR mutations are hyperactivating and can predict rapamycin sensitivity
Brian C Grabiner1, Valentina Nardi, Kıvanc Birsoy
11Whitehead Institute for Biomedical Research; 2Howard Hughes Medical Institute and Department of Biology, MIT; 3Broad Institute of Harvard and MIT; 4The David H. Koch Institute for Integrative Cancer Research at MIT, Cambridge; 5Department of Pathology, Massachusetts General Hospital Cancer Center; and 6Department of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts.
Abstract:
Genes encoding components of the PI3K-AKT-mTOR signaling axis are frequently mutated in cancer, but few mutations have been characterized in MTOR, the gene encoding the mTOR kinase. Using publicly available tumor genome sequencing data, we generated a comprehensive catalog of mTOR pathway mutations in cancer, identifying 33 MTOR mutations that confer pathway hyperactivation. The mutations cluster in six distinct regions in the C-terminal half of mTOR and occur in multiple cancer types, with one cluster particularly prominent in kidney cancer. The activating mutations do not affect mTOR complex assembly, but a subset reduces binding to the mTOR inhibitor DEPTOR. mTOR complex 1 (mTORC1) signaling in cells expressing various activating mutations remains sensitive to pharmacologic mTOR inhibition, but is partially resistant to nutrient deprivation. Finally, cancer cell lines with hyperactivating MTOR mutations display heightened sensitivity to rapamycin both in culture and in vivo xenografts, suggesting that such mutations confer mTOR pathway dependency.
Insights
This study identifies 33 cancer-driving mutations in the MTOR gene, revealing how these mTOR pathway mutations impact cancer development and sensitivity to targeted therapies like rapamycin.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- The PI3K-AKT-mTOR signaling pathway is crucial in cell growth and frequently altered in cancer.
- Mutations in MTOR, the gene encoding mTOR kinase, are less understood compared to other pathway components.
Purpose of the Study:
- To comprehensively catalog mutations in the MTOR gene within human cancers.
- To characterize the functional impact of identified MTOR mutations on pathway activity and cancer cell behavior.
Main Methods:
- Analysis of publicly available tumor genome sequencing data.
- Functional assays to assess mTOR complex assembly, DEPTOR binding, and signaling pathway activation.
- Evaluation of cancer cell line sensitivity to rapamycin in vitro and in vivo.
Main Results:
- Identified 33 novel MTOR mutations leading to pathway hyperactivation, clustering in specific regions.
- Mutations affect DEPTOR binding but not mTOR complex assembly.
- Cells with activating MTOR mutations show altered nutrient sensitivity but increased dependency on the mTOR pathway.
Conclusions:
- Discovered a set of activating MTOR mutations prevalent in various cancers, notably kidney cancer.
- Activating MTOR mutations confer sensitivity to mTOR inhibitors like rapamycin, suggesting therapeutic potential.
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