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Updated: May 2, 2026

In Vivo CRISPR/Cas9 Screening to Simultaneously Evaluate Gene Function in Mouse Skin and Oral Cavity
Published on: November 2, 2020
KRAS, BRAF and PIK3CA status in squamous cell anal carcinoma (SCAC)
Andrea Casadei Gardini1, Laura Capelli1, Paola Ulivi1
1Istituto Scientifico Romagnolo per lo Studio e la Cura dei Tumori (IRST) IRCCS, Meldola, Italy.
Abstract:
Anti-EGFR therapy appears to be a potential treatment option for squamous cell anal carcinoma (SCAC). KRAS mutation is a rare event in SCAC, indicating the absence of the principal mechanism of resistance to this type of therapy. However, no information is available from the literature regarding the status of BRAF or PIK3CA in this cancer type. We analysed KRAS, BRAF and PIK3CA status in SCAC patients in relation to the clinical-pathological characteristics of patients and to the presence of the human papilloma virus (HPV). One hundred and three patients were treated with the Nigro scheme for anal cancer from March 2001 to August 2012. Fifty patients were considered for the study as there was insufficient paraffin-embedded tumour tissue to perform molecular analysis the remaining 53. DNA was extracted from paraffin-embedded sections. KRAS, BRAF and PIK3CA gene status and HPV genotype were evaluated by pyrosequencing. KRAS and BRAF genes were wild-type in all cases. Conversely, PIK3CA gene was found to be mutated in 11 (22%) cases. In particular, 8 mutations occurred in exon 9 and 3 in exon 20 of the PIK3CA gene. These findings suggest that SCAC could potentially respond to an anti-EGFR drug. PIK3CA mutation may be involved in the process of carcinogenesis in some cases of SCAC.
Insights
Squamous cell anal carcinoma (SCAC) shows no KRAS or BRAF mutations, suggesting potential response to anti-EGFR therapy. PIK3CA mutations were found in 22% of SCAC patients, potentially influencing carcinogenesis.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Squamous cell anal carcinoma (SCAC) is a rare malignancy.
- Anti-epidermal growth factor receptor (EGFR) therapy is a potential treatment for SCAC.
- KRAS mutations, a common resistance mechanism to anti-EGFR therapy, are rare in SCAC.
Purpose of the Study:
- To investigate the status of KRAS, BRAF, and PIK3CA genes in SCAC.
- To correlate these genetic alterations with clinical-pathological characteristics and human papilloma virus (HPV) presence.
- To assess the potential for anti-EGFR therapy in SCAC based on these genetic profiles.
Main Methods:
- Analysis of DNA from 50 SCAC tumor samples.
- Pyrosequencing was used to evaluate KRAS, BRAF, and PIK3CA gene status.
- HPV genotyping was performed.
Main Results:
- KRAS and BRAF genes were wild-type in all analyzed SCAC samples.
- PIK3CA gene mutations were identified in 11 (22%) of the cases.
- Mutations in PIK3CA were located in exon 9 (8 cases) and exon 20 (3 cases).
Conclusions:
- The absence of KRAS and BRAF mutations suggests SCAC may be sensitive to anti-EGFR therapy.
- PIK3CA mutations are present in a subset of SCAC patients and may play a role in tumorigenesis.
- Further research is warranted to explore the therapeutic implications of PIK3CA mutations in SCAC.
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