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Genome-Wide CRISPR Screen for Unveiling Radiosensitive and Radioresistant Genes
Published on: May 23, 2025
EGFR-mediated chromatin condensation protects KRAS-mutant cancer cells against ionizing radiation
Meng Wang1, Ashley M Kern1, Marieke Hülskötter1
1Authors' Affiliations: Department of Radiation Oncology, Massachusetts General Hospital; Center for Cancer Research, Massachusetts General Hospital Cancer Center; Department of Radiation Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts; Department of Radiation Oncology, Medical Faculty and University Hospital Carl Gustav Carus, Technische Universität Dresden, Dresden; OncoRay-National Center for Radiation Research in Oncology, Medical Faculty and University Hospital Carl Gustav Carus, Technische Universität Dresden, Dresden; Institute of Radiation Oncology, Helmholtz-Zentrum Dresden-Rossendorf, Dresden; and Cancer Consortium (DKTK) Partner Site Dresden and German Cancer Research Center (DKFZ), Heidelberg, Germany.
Abstract:
Therapeutics that target the epidermal growth factor receptor (EGFR) can enhance the cytotoxic effects of ionizing radiation (IR). However, predictive genomic biomarkers of this radiosensitization have remained elusive. By screening 40 non-small cell lung cancer cell (NSCLC) lines, we established a surprising positive correlation between the presence of a KRAS mutation and radiosensitization by the EGFR inhibitors erlotinib and cetuximab. EGFR signaling in KRAS-mutant NSCLC cells promotes chromatin condensation in vitro and in vivo, thereby restricting the number of DNA double-strand breaks (DSB) produced by a given dose of IR. Chromatin condensation in interphase cells is characterized by an unexpected mitosis-like colocalization of serine 10 phosphorylation and lysine 9 trimethylation on histone H3. Aurora B promotes this process in a manner that is codependent upon EGFR and protein kinase C α (PKCα). PKCα, in addition to MEK/ERK signaling, is required for the suppression of DSB-inducible premature senescence by EGFR. Blockade of autophagy results in a mutant KRAS-dependent senescence-to-apoptosis switch in cancer cells treated with IR and erlotinib. In conclusion, we identify EGFR as a molecular target to overcome a novel mechanism of radioresistance in KRAS-mutant tumor cells, which stands in contrast to the unresponsiveness of KRAS-mutant cancers to EGFR-directed agents in monotherapy. Our findings may reposition EGFR-targeted agents for combination with DSB-inducing therapies in KRAS-mutant NSCLC.
Insights
Epidermal growth factor receptor (EGFR) inhibitors enhance radiation therapy in KRAS-mutant non-small cell lung cancer (NSCLC). EGFR signaling in KRAS-mutant NSCLC promotes chromatin condensation, reducing radiation-induced DNA damage and conferring radioresistance.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genetics
Background:
- Epidermal growth factor receptor (EGFR) inhibitors can potentiate the effects of ionizing radiation (IR).
- Predictive biomarkers for EGFR inhibitor-induced radiosensitization in cancer remain largely undiscovered.
- Non-small cell lung cancer (NSCLC) with KRAS mutations often shows resistance to EGFR-targeted therapies.
Purpose of the Study:
- To identify genomic biomarkers predicting radiosensitization by EGFR inhibitors.
- To elucidate the molecular mechanisms underlying radiosensitization in KRAS-mutant NSCLC.
- To explore novel therapeutic strategies combining EGFR inhibitors with DNA-damaging agents.
Main Methods:
- Screening of 40 non-small cell lung cancer (NSCLC) cell lines to identify correlations between mutations and radiosensitization.
- Investigating the role of EGFR signaling in chromatin condensation and DNA double-strand break (DSB) formation in response to IR.
- Analyzing the involvement of histone modifications (H3S10ph, H3K9me3), Aurora B, protein kinase C alpha (PKCα), and MEK/ERK signaling pathways.
- Assessing the impact of autophagy blockade on cell fate (senescence vs. apoptosis) in response to IR and erlotinib.
Main Results:
- A positive correlation was found between KRAS mutations and radiosensitization by EGFR inhibitors (erlotinib, cetuximab) in NSCLC cell lines.
- EGFR signaling in KRAS-mutant NSCLC promotes interphase chromatin condensation, limiting IR-induced DSBs.
- This condensation involves a mitosis-like histone modification pattern regulated by Aurora B, EGFR, and PKCα.
- EGFR signaling, via PKCα and MEK/ERK, suppresses premature senescence induced by DSBs.
- Autophagy inhibition triggers a KRAS-dependent switch from senescence to apoptosis when combined with IR and erlotinib.
Conclusions:
- EGFR inhibition can overcome a novel radioresistance mechanism in KRAS-mutant NSCLC driven by chromatin condensation.
- This finding contrasts with the general unresponsiveness of KRAS-mutant cancers to EGFR inhibitors as monotherapy.
- EGFR-targeted agents may be repositioned for combination therapy with DNA-damaging agents in KRAS-mutant NSCLC.
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