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Updated: May 2, 2026

Heterokaryon Technique for Analysis of Cell Type-specific Localization
Published on: March 11, 2011
Characterization of nuclear localization and SUMOylation of the ATBF1 transcription factor in epithelial cells
Xiaodong Sun1, Jie Li1, Frederick N Dong1
1Winship Cancer Institute, Department of Hematology and Medical Oncology, Emory University School of Medicine, Atlanta, Georgia, United States of America.
Abstract:
ATBF1/ZFHX3 is a large transcription factor that functions in development, tumorigenesis and other biological processes. ATBF1 is normally localized in the nucleus, but is often mislocalized in the cytoplasm in cancer cells. The mechanism underlying the mislocalization of ATBF1 is unknown. In this study, we analyzed the nuclear localization of ATBF1, and found that ectopically expressed ATBF1 formed nuclear body (NB)-like dots in the nucleus, some of which indeed physically associated with promyelocytic leukemia (PML) NBs. We also defined a 3-amino acid motif, KRK2615-2617, as the nuclear localization signal (NLS) for ATBF1. Interestingly, diffusely distributed nuclear SUMO1 proteins were sequestered into ATBF1 dots, which could be related to ATBF1's physical association with PML NBs, known SUMOylation hotspots. Furthermore, ATBF1 itself was SUMOylated. ATBF1 SUMOylation occurred at more than 3 lysine residues including K2349, K2806 and K3258 and was nuclear specific. Finally, the PIAS3 SUMO1 E3 ligase, which interacts with ATBF1 directly, diminished rather than enhanced ATBF1 SUMOylation, preventing the co-localization of ATBF1 with SUMO1 in the nucleus. These findings suggest that nuclear localization and SUMOylation are important for the transcription factor function of ATBF1, and that ATBF1 could cooperate with PML NBs to regulate protein SUMOylation in different biological processes.
Insights
ATBF1/ZFHX3, a nuclear transcription factor, forms nuclear dots and is SUMOylated. Its nuclear localization signal (NLS) and SUMOylation sites were identified, revealing interactions with PML NBs and SUMO1 regulation.
Area of Science:
- Molecular Biology
- Cell Biology
- Cancer Research
Background:
- ATBF1/ZFHX3 is a crucial transcription factor involved in development and tumorigenesis.
- Mislocalization of ATBF1 from the nucleus to the cytoplasm is observed in cancer cells, but the mechanism is unclear.
- Understanding ATBF1's localization and post-translational modifications is key to its function.
Purpose of the Study:
- To investigate the mechanism of ATBF1 nuclear localization.
- To identify the nuclear localization signal (NLS) of ATBF1.
- To explore the SUMOylation of ATBF1 and its relationship with nuclear bodies and SUMO1.
Main Methods:
- Analysis of ectopic ATBF1 expression and localization in the nucleus.
- Identification of a specific 3-amino acid motif (KRK2615-2617) as the ATBF1 NLS.
- Investigation of ATBF1's association with promyelocytic leukemia (PML) nuclear bodies (NBs) and SUMO1.
- Identification of ATBF1 SUMOylation sites (K2349, K2806, K3258) and the role of PIAS3.
Main Results:
- Ectopically expressed ATBF1 forms nuclear body (NB)-like dots, some associating with PML NBs.
- A KRK motif (2615-2617) was identified as the NLS for ATBF1.
- ATBF1 sequesters nuclear SUMO1 into its dots and is itself SUMOylated at multiple lysine residues.
- PIAS3, an E3 SUMO ligase, diminishes ATBF1 SUMOylation and prevents ATBF1-SUMO1 co-localization.
Conclusions:
- Nuclear localization and SUMOylation are critical for ATBF1's transcription factor activity.
- ATBF1 interacts with PML NBs and influences SUMO1 localization, suggesting a role in regulating protein SUMOylation.
- These findings provide insights into ATBF1 function in biological processes and cancer.
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