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Updated: May 1, 2026

Identification of Kinase-substrate Pairs Using High Throughput Screening
Published on: August 29, 2015
Crystal structures of human CtBP in complex with substrate MTOB reveal active site features useful for inhibitor
Brendan J Hilbert1, Steven R Grossman2, Celia A Schiffer1
1Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Abstract:
The oncogenic corepressors C-terminal Binding Protein (CtBP) 1 and 2 harbor regulatory d-isomer specific 2-hydroxyacid dehydrogenase (d2-HDH) domains. 4-Methylthio 2-oxobutyric acid (MTOB) exhibits substrate inhibition and can interfere with CtBP oncogenic activity in cell culture and mice. Crystal structures of human CtBP1 and CtBP2 in complex with MTOB and NAD(+) revealed two key features: a conserved tryptophan that likely contributes to substrate specificity and a hydrophilic cavity that links MTOB with an NAD(+) phosphate. Neither feature is present in other d2-HDH enzymes. These structures thus offer key opportunities for the development of highly selective anti-neoplastic CtBP inhibitors.
Insights
Oncogenic C-terminal Binding Proteins (CtBP) 1 and 2 were studied using 4-Methylthio 2-oxobutyric acid (MTOB). Crystal structures reveal unique features for developing targeted anti-cancer therapies.
Area of Science:
- Biochemistry
- Molecular Biology
- Oncology
Background:
- C-terminal Binding Proteins (CtBP) 1 and 2 are oncogenic corepressors.
- These proteins contain regulatory d-isomer specific 2-hydroxyacid dehydrogenase (d2-HDH) domains.
- 4-Methylthio 2-oxobutyric acid (MTOB) can inhibit CtBP activity.
Purpose of the Study:
- To elucidate the structural basis of CtBP inhibition by MTOB.
- To identify unique structural features of CtBP d2-HDH domains.
- To explore opportunities for developing selective anti-cancer drugs targeting CtBP.
Main Methods:
- X-ray crystallography was used to determine the structures of human CtBP1 and CtBP2.
- Complex structures were solved in the presence of MTOB and NAD(+).
Main Results:
- Crystal structures revealed two key features in CtBP1 and CtBP2: a conserved tryptophan for substrate specificity and a hydrophilic cavity linking MTOB to NAD(+).
- These identified features are not present in other d2-HDH enzymes.
- MTOB demonstrated substrate inhibition, interfering with CtBP oncogenic activity.
Conclusions:
- The unique structural features of CtBP1 and CtBP2 provide a basis for developing highly selective inhibitors.
- Targeting CtBP with novel inhibitors holds promise for anti-neoplastic therapies.
- Understanding CtBP-MTOB interactions is crucial for cancer drug development.
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