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Updated: May 1, 2026

Natural Product Discovery with LC-MS/MS Diagnostic Fragmentation Filtering: Application for Microcystin Analysis
Published on: May 31, 2019
Isolation of Microcystins from the Cyanobacterium Planktothrix rubescens Strain No80
Timo H J Niedermeyer1, Peter Schmieder2, Rainer Kurmayer3
1Cyano Biotech GmbH, Magnusstr. 11, 12489 Berlin, Germany ; Interfaculty Institute for Microbiology and Infection Medicine Tübingen, Eberhard Karls University Tübingen, Auf der Morgenstelle 28, 72076 Tübingen, Germany.
Abstract:
Three minor microcystins have been isolated from a Planktothrix rubescens strain. Their structures have been elucidated by one- and two-dimensional NMR spectroscopy and high-resolution tandem mass spectrometry as the compounds [Asp(3),(E)-Dhb(7)]MC-LY (1), [Asp(3),(E)-Dhb(7)]MC-HtyW (2), and [Asp(3),(E)-Dhb(7)]MC-LW (3). The amino acids found at the variable positions 2 and 4 of the microcystin core structure are in accordance with the predicted amino acid substrate activation selectivities of the non-ribosomal peptide synthetases McyA and McyB described earlier for this strain. All structural microcystin variants produced by this strain were shown to inhibit protein phosphatase 1 in the nanomolar range.

