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Updated: May 1, 2026

Untargeted Metabolomics from Biological Sources Using Ultraperformance Liquid Chromatography-High Resolution Mass Spectrometry UPLC-HRMS
Published on: May 20, 2013
LC-MS-based Metabolomics of Xenobiotic-induced Toxicities
1Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN 55108, United States.
Abstract:
Xenobiotic exposure, especially high-dose or repeated exposure of xenobiotics, can elicit detrimental effects on biological systems through diverse mechanisms. Changes in metabolic systems, including formation of reactive metabolites and disruption of endogenous metabolism, are not only the common consequences of toxic xenobiotic exposure, but in many cases are the major causes behind development of xenobiotic-induced toxicities (XIT). Therefore, examining the metabolic events associated with XIT generates mechanistic insights into the initiation and progression of XIT, and provides guidance for prevention and treatment. Traditional bioanalytical platforms that target only a few suspected metabolites are capable of validating the expected outcomes of xenobiotic exposure. However, these approaches lack the capacity to define global changes and to identify unexpected events in the metabolic system. Recent developments in high-throughput metabolomics have dramatically expanded the scope and potential of metabolite analysis. Among all analytical techniques adopted for metabolomics, liquid chromatography-mass spectrometry (LC-MS) has been most widely used for metabolomic investigations of XIT due to its versatility and sensitivity in metabolite analysis. In this review, technical platform of LC-MS-based metabolomics, including experimental model, sample preparation, instrumentation, and data analysis, are discussed. Applications of LC-MS-based metabolomics in exploratory and hypothesis-driven investigations of XIT are illustrated by case studies of xenobiotic metabolism and endogenous metabolism associated with xenobiotic exposure.
Insights
Liquid chromatography-mass spectrometry (LC-MS) based metabolomics offers a powerful approach to understand xenobiotic-induced toxicities (XIT). This method reveals global metabolic changes, providing crucial insights into XIT mechanisms and potential treatments.
Area of Science:
- Toxicology
- Metabolomics
- Biochemistry
Background:
- Xenobiotic exposure can cause significant harm through metabolic disruption.
- Understanding xenobiotic-induced toxicities (XIT) requires examining metabolic alterations.
- Traditional methods are limited in detecting global metabolic changes.
Purpose of the Study:
- To review the technical platform of LC-MS-based metabolomics for XIT research.
- To illustrate the application of LC-MS metabolomics in studying xenobiotic and endogenous metabolism.
- To provide mechanistic insights into XIT initiation and progression.
Main Methods:
- High-throughput metabolomics using liquid chromatography-mass spectrometry (LC-MS).
- Discussion of experimental models, sample preparation, instrumentation, and data analysis.
- Case studies demonstrating LC-MS applications in XIT investigations.
Main Results:
- LC-MS metabolomics enables comprehensive analysis of metabolic events.
- Identifies both expected and unexpected metabolic changes associated with xenobiotics.
- Facilitates a deeper understanding of xenobiotic metabolism and its toxicological impact.
Conclusions:
- LC-MS-based metabolomics is a versatile and sensitive tool for XIT research.
- This approach provides critical mechanistic insights for XIT prevention and treatment.
- Advances in metabolomics expand the scope for investigating complex toxicological pathways.

