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Updated: May 1, 2026

Evaluation of Biomarkers in Glioma by Immunohistochemistry on Paraffin-Embedded 3D Glioma Neurosphere Cultures
Published on: January 9, 2019
Targetable signaling pathway mutations are associated with malignant phenotype in IDH-mutant gliomas
Hiroaki Wakimoto1, Shota Tanaka1, William T Curry2
1Authors' Affiliations: Department of Neurosurgery; Division of Hematology/Oncology, Department of Neurology, Stephen E. and Catherine Pappas Center for Neuro-Oncology, Translational Research Laboratory; Department of Pathology; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge; Translational Neuro-Oncology Laboratory; Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, Massachusetts; Vesalius Research Center, VIB and Department of Oncology, KU Leuven, Leuven, BelgiumAuthors' Affiliations: Department of Neurosurgery; Division of Hematology/Oncology, Department of Neurology, Stephen E. and Catherine Pappas Center for Neuro-Oncology, Translational Research Laboratory; Department of Pathology; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge; Translational Neuro-Oncology Laboratory; Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, Massachusetts; Vesalius Research Center, VIB and Department of Oncology, KU Leuven, Leuven, BelgiumAuthors' Affiliations: Department of Neurosurgery; Division of Hematology/Oncology, Department of Neurology, Stephen E. and Catherine Pappas Center for Neuro-Oncology, Translational Research Laboratory; Department of Pathology; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge; Translational Neuro-Oncology Laboratory; Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, Massachusetts; Vesalius Research Center, VIB and Department of Oncology, KU Leuven, Leuven, Belgium.
Purpose:
Isocitrate dehydrogenase (IDH) gene mutations occur in low-grade and high-grade gliomas. We sought to identify the genetic basis of malignant phenotype heterogeneity in IDH-mutant gliomas.
Methods:
We prospectively implanted tumor specimens from 20 consecutive IDH1-mutant glioma resections into mouse brains and genotyped all resection specimens using a CLIA-certified molecular panel. Gliomas with cancer driver mutations were tested for sensitivity to targeted inhibitors in vitro. Associations between genomic alterations and outcomes were analyzed in patients.
Results:
By 10 months, 8 of 20 IDH1-mutant gliomas developed intracerebral xenografts. All xenografts maintained mutant IDH1 and high levels of 2-hydroxyglutarate on serial transplantation. All xenograft-producing gliomas harbored "lineage-defining" mutations in CIC (oligodendroglioma) or TP53 (astrocytoma), and 6 of 8 additionally had activating mutations in PIK3CA or amplification of PDGFRA, MET, or N-MYC. Only IDH1 and CIC/TP53 mutations were detected in non-xenograft-forming gliomas (P = 0.0007). Targeted inhibition of the additional alterations decreased proliferation in vitro. Moreover, we detected alterations in known cancer driver genes in 13.4% of IDH-mutant glioma patients, including PIK3CA, KRAS, AKT, or PTEN mutation or PDGFRA, MET, or N-MYC amplification. IDH/CIC mutant tumors were associated with PIK3CA/KRAS mutations whereas IDH/TP53 tumors correlated with PDGFRA/MET amplification. Presence of driver alterations at progression was associated with shorter subsequent progression-free survival (median 9.0 vs. 36.1 months; P = 0.0011).
Conclusion:
A subset of IDH-mutant gliomas with mutations in driver oncogenes has a more malignant phenotype in patients. Identification of these alterations may provide an opportunity for use of targeted therapies in these patients. Clin Cancer Res; 20(11); 2898-909. ©2014 AACR.
Insights
Certain IDH-mutant gliomas with additional driver mutations show a more aggressive cancer phenotype. Identifying these genetic alterations may guide targeted therapy for improved patient outcomes.
Area of Science:
- Neuro-oncology
- Cancer Genomics
- Molecular Pathology
Background:
- Isocitrate dehydrogenase (IDH) gene mutations are prevalent in both low-grade and high-grade gliomas.
- Understanding the genetic drivers of malignant phenotype heterogeneity in IDH-mutant gliomas is crucial for effective treatment strategies.
Purpose of the Study:
- To identify the genetic basis for the diverse malignant phenotypes observed in IDH-mutant gliomas.
- To investigate the role of additional genetic alterations in driving glioma progression and heterogeneity.
Main Methods:
- Prospective implantation of 20 IDH1-mutant glioma specimens into mouse brains for xenograft development.
- Comprehensive genotyping of tumor specimens using a CLIA-certified molecular panel.
- In vitro testing of gliomas with driver mutations for sensitivity to targeted inhibitors and analysis of genomic alterations and patient outcomes.
Main Results:
- Eight of 20 IDH1-mutant gliomas formed intracerebral xenografts, maintaining mutant IDH1 and high 2-hydroxyglutarate levels.
- Xenograft-forming gliomas frequently harbored lineage-defining mutations (CIC or TP53) plus additional driver mutations (PIK3CA, PDGFRA, MET, N-MYC), unlike non-xenograft-forming gliomas.
- Driver alterations were found in 13.4% of IDH-mutant glioma patients, correlating with specific mutation patterns (IDH/CIC with PIK3CA/KRAS; IDH/TP53 with PDGFRA/MET amplification).
- The presence of driver alterations at progression was linked to significantly shorter progression-free survival (9.0 vs. 36.1 months).
Conclusions:
- A subset of IDH-mutant gliomas exhibits a more malignant phenotype due to mutations in driver oncogenes.
- Identifying these specific genetic alterations offers potential for targeted therapy in affected glioma patients.
- These findings highlight the importance of comprehensive genomic profiling for personalized glioma treatment.
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