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Updated: Apr 30, 2026

Synthesis of Information-bearing Peptoids and their Sequence-directed Dynamic Covalent Self-assembly
Published on: February 6, 2020
1-Piperonylpiperazinium 4-nitro-benzoate monohydrate.
Channappa N Kavitha1, Manpreet Kaur1, Brian J Anderson2
1Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570 006, India.
This study details the crystal structure of a hydrated salt, 1-(1,3-benzodioxol-5-ylmeth-yl)piperazin-1-ium 4-nitro-benzoate monohydrate. It reveals hydrogen bonding and pi-stacking interactions that organize the crystal lattice.
Area of Science:
- Crystallography
- Chemical Physics
- Materials Science
Background:
- Understanding the solid-state structure of organic salts is crucial for predicting their physical and chemical properties.
- Piperazine derivatives and nitrobenzoates are common motifs in medicinal chemistry and materials science.
- Hydrated salts exhibit unique packing arrangements influenced by water molecules.
Purpose of the Study:
- To elucidate the crystal structure of 1-(1,3-benzodioxol-5-ylmeth-yl)piperazin-1-ium 4-nitro-benzoate monohydrate.
- To analyze the intermolecular interactions, including hydrogen bonding and pi-stacking, within the crystal lattice.
- To characterize the conformational preferences of the cation and anion in the solid state.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the three-dimensional structure.
- Analysis of bond lengths, bond angles, and torsion angles provided conformational insights.
- Intermolecular interactions were identified and quantified using hydrogen bond analysis and pi-stacking measurements.
Main Results:
- The piperazinium ring adopts a distorted chair conformation, with a specific torsion angle between the piperonyl and piperazine rings.
- The nitro group of the benzoate anion is nearly coplanar with its benzene ring.
- Cations, anions, and water molecules form chains via N-H···O and O-H···O hydrogen bonds.
- Anions form centrosymmetric pairs through pi-stacking interactions with a defined inter-centroid distance.
Conclusions:
- The crystal structure of the title hydrated salt has been successfully determined.
- Hydrogen bonding and pi-stacking interactions are key factors governing the supramolecular assembly.
- The findings contribute to the understanding of structure-property relationships in organic salts.
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