TRIM65 regulates microRNA activity by ubiquitination of TNRC6
Shitao Li1, Lingyan Wang2, Bishi Fu2
1Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115 shitao_li@hms.harvard.edu dorf@hms.harvard.edu.
Abstract:
MicroRNAs (miRNAs) are small evolutionarily conserved regulatory RNAs that modulate mRNA stability and translation in a wide range of cell types. MiRNAs are involved in a broad array of biological processes, including cellular proliferation, differentiation, and apoptosis. To identify previously unidentified regulators of miRNA, we initiated a systematic discovery-type proteomic analysis of the miRNA pathway interactome in human cells. Six of 66 genes identified in our proteomic screen were capable of regulating lethal-7a (let-7a) miRNA reporter activity. Tripartite motif 65 (TRIM65) was identified as a repressor of miRNA activity. Detailed analysis indicates that TRIM65 interacts and colocalizes with trinucleotide repeat containing six (TNRC6) proteins in processing body-like structures. Ubiquitination assays demonstrate that TRIM65 is an ubiquitin E3 ligase for TNRC6 proteins. The combination of overexpression and knockdown studies establishes that TRIM65 relieves miRNA-driven suppression of mRNA expression through ubiquitination and subsequent degradation of TNRC6.
Insights
Tripartite motif 65 (TRIM65) protein was discovered to regulate microRNA (miRNA) activity by targeting TNRC6 proteins for degradation, thereby relieving miRNA-mediated gene silencing.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- MicroRNAs (miRNAs) are crucial regulators of gene expression, influencing cellular processes like proliferation and apoptosis.
- Identifying novel regulators of miRNA pathways is essential for understanding gene regulation.
Purpose of the Study:
- To systematically identify novel regulators of microRNA activity in human cells.
- To elucidate the mechanism by which Tripartite motif 65 (TRIM65) influences miRNA function.
Main Methods:
- Proteomic analysis of the miRNA pathway interactome.
- Reporter assays to measure miRNA activity.
- Co-localization studies and ubiquitination assays.
- Overexpression and knockdown experiments.
Main Results:
- A proteomic screen identified 66 potential miRNA pathway interactors, with six genes regulating let-7a miRNA activity.
- TRIM65 was identified as a repressor of miRNA activity.
- TRIM65 interacts with and ubiquitinates TNRC6 proteins, leading to their degradation.
- TRIM65 overexpression relieved miRNA-driven mRNA suppression.
Conclusions:
- TRIM65 acts as an E3 ubiquitin ligase for TNRC6 proteins, promoting their degradation.
- TRIM65 antagonizes miRNA activity by targeting TNRC6, a key component of the miRNA-induced silencing complex.
- This finding reveals a novel mechanism for regulating miRNA function and gene expression.
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