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Updated: Apr 30, 2026

DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments
Published on: January 27, 2016
Aggresome formation is regulated by RanBPM through an interaction with HDAC6
Louisa M Salemi1, Ahmad W Almawi1, Karen J Lefebvre1
1Robarts Research Institute, The University of Western Ontario, London, ON N6A 5B7, Canada Department of Biochemistry, Schulich School of Medicine and Dentistry, The University of Western Ontario, London, ON N6A 5C1, Canada.
Ran-Binding Protein M (RanBPM) is a key regulator of aggresome formation, promoting the cellular response to damaged proteins by interacting with and inhibiting histone deacetylase 6 (HDAC6). This study reveals RanBPM
Area of Science:
- Cell Biology
- Molecular Biology
- Protein Degradation
Background:
- Proteasomal impairment leads to the accumulation of damaged proteins, forming aggresomes.
- Aggresome formation involves protein transport along microtubules and depends on histone deacetylase 6 (HDAC6).
- The role of Ran-Binding Protein M (RanBPM) in aggresome formation is not well understood.
Purpose of the Study:
- To investigate the role of RanBPM in aggresome formation.
- To elucidate the mechanism by which RanBPM influences aggresome biogenesis.
Main Methods:
- Immunofluorescence microscopy to observe protein localization.
- Cellular treatments with ionizing radiation, MG132, and etoposide.
- RNA interference (shRNA) to deplete RanBPM.
- Co-immunoprecipitation and in vitro assays to study protein interactions and enzyme activity.
Main Results:
- RanBPM relocalizes to perinuclear aggresomes upon cellular stress, co-localizing with ubiquitin, dynein, and HDAC6.
- RanBPM depletion impairs aggresome formation mediated by HDAC6.
- RanBPM directly interacts with HDAC6, inhibiting its deacetylase activity via the LisH/CTLH domain.
Conclusions:
- RanBPM is a crucial regulator of aggresome formation.
- RanBPM modulates HDAC6 activity, thereby controlling the cellular response to protein aggregation.
- RanBPM acts as a central component in the aggresome biogenesis pathway.
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