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Updated: Apr 30, 2026

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
Exposure to a histone deacetylase inhibitor has detrimental effects on human lymphocyte viability and function
Deborah J L Wong1, Amol Rao, Earl Avramis
1Authors' Affiliations: Department of Immunology, Roswell Park Cancer Institute, Buffalo, New York.
Abstract:
Histone deacetylase inhibitors (HDACi) have been reported to increase tumor antigen expression, and have been successfully tested as adjuvants for melanoma immunotherapy in mouse models. In this work, we tested the effects of a pan-HDACi on human lymphocytes and melanoma cell lines. Effects of the pan-HDACi panobinostat (LBH589) on cell viability, cell cycle, apoptosis, and DNA damage were determined in peripheral blood mononuclear cells (PBMC) from 2 healthy donors, 13 patients with metastatic melanoma, 2 bone marrow samples from patients with different malignances, and 12 human melanoma cell lines. Intracellular signaling in lymphocytes, with or without cytokine stimulation, was analyzed by phospho-flow cytometry in one of each type. The IC50 in PBMCs was <20 nmol/L compared with >600 nmol/L in melanoma cell lines; >40% apoptotic cell death in PBMCs versus <10% in melanoma cell lines was seen at the same concentration. Phospho-histone variant H2A.X (pH2A.X) increased 2-fold in healthy donor PBMCs at 1 nmol/L, whereas the same effect in the melanoma cell line M229 required 10 nmol/L. pH2A.X was inhibited slightly in the PBMCs of 3 patients with metastatic melanoma at 1 nmol/L and in the melanoma cell line M370 at 10 nmol/L. Panobinostat inhibited phospho-STAT1/3/5/6, -p38, -ERK, -p53, -cyclin D3, and -histone H3 in flow cytometry-gated healthy donor B and T cells, whereas it induced up to 6-fold activation in patients with metastatic melanoma and bone marrow samples. In human lymphocytes, panobinostat alters key lymphocyte activation signaling pathways and is cytotoxic at concentrations much lower than those required for melanoma antitumor activity, resulting in an adverse therapeutic window.
Insights
Panobinostat, a histone deacetylase inhibitor, is cytotoxic to human lymphocytes at lower concentrations than melanoma cells, indicating a narrow therapeutic window for melanoma immunotherapy.
Area of Science:
- Immunology
- Oncology
- Pharmacology
Background:
- Histone deacetylase inhibitors (HDACi) enhance tumor antigen expression and show promise as adjuvants for melanoma immunotherapy in preclinical models.
- Panobinostat (LBH589) is a pan-HDAC inhibitor investigated for its effects on human immune cells and melanoma.
Purpose of the Study:
- To evaluate the effects of panobinostat on human lymphocytes and melanoma cell lines.
- To determine the therapeutic window of panobinostat for potential use in melanoma treatment.
Main Methods:
- Assessed cell viability, cell cycle, apoptosis, and DNA damage in peripheral blood mononuclear cells (PBMC) and melanoma cell lines using panobinostat.
- Analyzed intracellular signaling pathways in lymphocytes via phospho-flow cytometry.
- Determined IC50 values and measured phospho-histone variant H2A.X (pH2A.X) levels.
Main Results:
- Panobinostat exhibited significantly higher cytotoxicity in PBMCs (IC50 <20 nmol/L) compared to melanoma cell lines (>600 nmol/L).
- Apoptotic cell death was greater in PBMCs (>40%) than in melanoma cells (<10%) at equivalent concentrations.
- Panobinostat induced DNA damage (pH2A.X increase) at lower concentrations in healthy PBMCs than in melanoma cells, but showed inhibition in patient PBMCs and melanoma cells.
- Signaling pathway analysis revealed inhibition in healthy lymphocytes but activation in melanoma patient samples.
Conclusions:
- Panobinostat demonstrates a narrow therapeutic window due to its potent cytotoxicity towards human lymphocytes at concentrations lower than those effective against melanoma.
- The differential effects on immune cells versus tumor cells suggest potential challenges for its use as an adjuvant in melanoma immunotherapy.
- Further research is needed to optimize HDACi strategies for melanoma treatment, considering immune system modulation.
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