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    Kernel parallel analysis (kPA) automatically selects parameters for Gaussian kernel principal component analysis (KPCA). This method improves denoising performance by optimizing kernel scale and model order, outperforming existing heuristics.

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    Area of Science:

    • Computational statistics
    • Machine learning
    • Data analysis

    Background:

    • Principal Component Analysis (PCA) is a dimensionality reduction technique.
    • Kernel PCA (KPCA) extends PCA using the kernel trick for non-linear data.
    • Selecting optimal parameters like kernel scale and model order in KPCA is challenging.

    Purpose of the Study:

    • To introduce Kernel Parallel Analysis (kPA) for automatic parameter selection in Gaussian KPCA.
    • To enhance the parallel analysis method for simultaneous tuning of kernel scale and model order.
    • To evaluate kPA's effectiveness in data denoising tasks.

    Main Methods:

    • Kernel Parallel Analysis (kPA) based on permutation testing of covariance.
    • Augmentation of parallel analysis for Gaussian radial basis function kernel scale.
    • Application to simulated data and the U.S. Postal handwritten digit dataset.

    Main Results:

    • kPA successfully automates kernel scale and model order selection for Gaussian KPCA.
    • kPA demonstrates superior performance in denoising compared to other heuristics.
    • Improved signal-to-noise ratio in denoised data using kPA.

    Conclusions:

    • kPA provides an effective and automated approach for parameter selection in KPCA.
    • The proposed method enhances denoising capabilities for complex datasets.
    • kPA offers a robust solution for optimizing Gaussian KPCA applications.