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Published on: November 29, 2016
Haplotype-specific modulation of a SOX10/CREB response element at the Charcot-Marie-Tooth disease type 4C locus
Megan Hwa Brewer1, Ki Hwan Ma2, Gary W Beecham3
1Department of Human Genetics.
Abstract:
Loss-of-function mutations in the Src homology 3 (SH3) domain and tetratricopeptide repeats 2 (SH3TC2) gene cause autosomal recessive demyelinating Charcot-Marie-Tooth neuropathy. The SH3TC2 protein has been implicated in promyelination signaling through axonal neuregulin-1 and the ERBB2 Schwann cell receptor. However, little is known about the transcriptional regulation of the SH3TC2 gene. We performed computational and functional analyses that revealed two cis-acting regulatory elements at SH3TC2-one at the promoter and one ∼150 kb downstream of the transcription start site. Both elements direct reporter gene expression in Schwann cells and are responsive to the transcription factor SOX10, which is essential for peripheral nervous system myelination. The downstream enhancer harbors a single-nucleotide polymorphism (SNP) that causes an ∼80% reduction in enhancer activity. The SNP resides directly within a predicted binding site for the transcription factor cAMP response element binding protein (CREB), and we demonstrate that this regulatory element binds to CREB and is activated by CREB expression. Finally, forskolin induces Sh3tc2 expression in rat primary Schwann cells, indicating that SH3TC2 is a CREB target gene. These findings prompted us to determine if SNP genotypes at SH3TC2 are associated with differential phenotypes in the most common demyelinating peripheral neuropathy, CMT1A. Interestingly, this revealed several associations between SNP alleles and disease severity. In summary, our data indicate that SH3TC2 is regulated by the transcription factors CREB and SOX10, define a regulatory SNP at this disease-associated locus and reveal SH3TC2 as a candidate modifier locus of CMT disease phenotypes.
Insights
Mutations in the SH3TC2 gene cause Charcot-Marie-Tooth neuropathy. This study identifies regulatory elements and transcription factors (SOX10, CREB) controlling SH3TC2 expression, revealing a SNP that impacts disease severity.
Area of Science:
- Neuroscience
- Genetics
- Molecular Biology
Background:
- Loss-of-function mutations in SH3TC2 cause demyelinating Charcot-Marie-Tooth neuropathy.
- SH3TC2 protein is crucial for promyelination via neuregulin-1 and ERBB2 signaling.
- Transcriptional regulation of the SH3TC2 gene remains largely uncharacterized.
Purpose of the Study:
- To elucidate the transcriptional regulation of the SH3TC2 gene.
- To identify cis-acting regulatory elements and their controlling transcription factors.
- To investigate the impact of a specific SNP on SH3TC2 regulation and Charcot-Marie-Tooth disease phenotypes.
Main Methods:
- Computational and functional analyses to identify regulatory elements.
- Reporter gene assays in Schwann cells to assess enhancer activity.
- Electrophoretic mobility shift assays and in vitro binding assays to study transcription factor interactions.
- Analysis of SNP genotypes in relation to Charcot-Marie-Tooth type 1A (CMT1A) disease severity.
Main Results:
- Two cis-acting regulatory elements were identified: one promoter and one downstream enhancer.
- Both elements are responsive to SOX10 and direct reporter gene expression in Schwann cells.
- A single-nucleotide polymorphism (SNP) in the downstream enhancer significantly reduces its activity by ~80%.
- This SNP disrupts a CREB binding site, and SH3TC2 is confirmed as a CREB target gene.
- SH3TC2 SNP alleles showed associations with differential disease severity in CMT1A patients.
Conclusions:
- SH3TC2 gene expression is regulated by transcription factors SOX10 and CREB.
- A novel regulatory SNP within a CREB binding site at the SH3TC2 locus influences enhancer activity.
- SH3TC2 acts as a potential modifier locus for Charcot-Marie-Tooth disease phenotypes.
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